1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...acacatttgtatttttcatattgaagttttaaattccaatcacacttaagtataaatctaatgaccttttatcttttggttttgaaacgaatctgcttagGCTGCCAGTTTTGGTGGGTCCAATATCGATCCTACTGCATGGGAGGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAG
species | Zea mays |
transcript | GRMZM2G033117_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTCTTTTCCTCTATAACTACACAACCCACCAGCTTCATGGGGTATTTGAG GCTGCCAGTTTTGGTGGGTCCAATATCGATCCTACTGCATGGGAGGATAAGEST: gi|148949364|gb|EC894819.2|EC894819
genomic: CTCTTTTCCTCTATAACTACACAACCCACCAGCTTCATGGGGTATTTGAGgtgtgtgatt ... atctgcttagGCTGCCAGTTTTGGTGGGTCCAATATCGATCCTACTGCATGGGAGGATAAG
EST: CTCTTTTCCTCTATAACTACACAACCCACCAGCTTCATGGGGTATTTGAG GCTGCCAGTTTTGGTGGGTCCAATATCGATCCTACTGCATGEST: gi|28361820|gb|CB240176.1|CB240176
genomic: CTCTTTTCCTCTATAACTACACAACCCACCAGCTTCATGGGGTATTTGAGgtgtgtgatt ... atctgcttagGCTGCCAGTTTTGGTGGGTCCAATATCGATCCTACTGCATG
EST: CTCTTTTCCTCTATAACTACACAACCCACCAGCTTCATGGGGTATTTGAG GCTGCCAGTTTTGGTGGGTCCAATATCGATCCTACTGCATGGGAGGATAAGEST: gi|149102652|gb|EE288009.2|EE288009
genomic: CTCTTTTCCTCTATAACTACACAACCCACCAGCTTCATGGGGTATTTGAGgtgtgtgatt ... atctgcttagGCTGCCAGTTTTGGTGGGTCCAATATCGATCCTACTGCATGGGAGGATAAG
EST: TCTTTTCCTCTANTA-CTACACAACCCACCAGCTTCATGGGGTATTTGAG GCTGCCAGTTTTGGTGGGGTCCA-TATCGATCCTACTEST: gi|60350290|gb|DN217263.1|DN217263
genomic: TCTTTTCCTCTA-TAACTACACAACCCACCAGCTTCATGGGGTATTTGAGgtgtgtgatt ... atctgcttagGCTGCCAGTTTTGGTGGG-TCCAATATCGATCCTACT
EST: TCATGGGGTATTTGAG GCTGCCAGTTTTGGTGGGTCCAATATCGATCTTACTGCATGGGAGGATAAGEST: gi|78077999|gb|DV506414.1|DV506414
genomic: TCATGGGGTATTTGAGgtgtgtgatt ... atctgcttagGCTGCCAGTTTTGGTGGGTCCAATATCGATCCTACTGCATGGGAGGATAAG
EST: CTCTTTTCCTCTATAACTACACAACCCACCAGCTTCATGGGGTATTTGAG GCTGCCAGTTTTGGTGGGTCCAATATEST: gi|60357783|gb|DN224756.1|DN224756
genomic: CTCTTTTCCTCTATAACTACACAACCCACCAGCTTCATGGGGTATTTGAGgtgtgtgatt ... atctgcttagGCTGCCAGTTTTGGTGGGTCCAATAT
EST: TTTCCTCTATAACTACACAACCCACCAGCTTCATGGGGTATTTGAG GCTGCCAGTTTTGGTGGGTCCAATATCGATCCTACTGCATGGGAGGATAAGEST: gi|148932942|gb|EE285770.2|EE285770
genomic: TTTCCTCTATAACTACACAACCCACCAGCTTCATGGGGTATTTGAGgtgtgtgatt ... atctgcttagGCTGCCAGTTTTGGTGGGTCCAATATCGATCCTACTGCATGGGAGGATAAG
EST: CTCTTTTCCTCTATAACTACACAACCCACCAGCTTCATGGGGTATTTGAG GCTGCCAGTTTTTGGTGGGTCCAATATCGATCCTACTGCAEST: gi|149079919|gb|EE168929.2|EE168929
genomic: CTCTTTTCCTCTATAACTACACAACCCACCAGCTTCATGGGGTATTTGAGgtgtgtgatt ... atctgcttagGCTGCCAGTTTT-GGTGGGTCCAATATCGATCCTACTGCA
EST: CTCTTTTTCTCTATAACTACACAACCCACCAGCTTCATGGGGTATTTGAG GCTGCCAGTTTTGGTGGGGTC-AATATCGATCCTACTGCAEST: gi|60338189|gb|DN205162.1|DN205162
genomic: CTCTTTTCCTCTATAACTACACAACCCACCAGCTTCATGGGGTATTTGAGgtgtgtgatt ... atctgcttagGCTGCCAGTTTTGGTGGG-TCCAATATCGATCCTACTGCA
EST: CACAACCCACCAGCTTCATGGGGTA-TTGAGG GCTGCCAGTTTTGGTGGGTCCAATATCGATCCTACTGCATGGGAGGATAA
genomic: CACAACCCACCAGCTTCATGGGGTATTTGA-Ggtgtgtgatt ... atctgcttagGCTGCCAGTTTTGGTGGGTCCAATATCGATCCTACTGCATGGGAGGATAA
ttaagtataaatctaatgaccttttatcttttggttttgaaacgaatctgcttagGCTGCCAGTTTTGGTGGGTCCAATATCGATCCTACTGCATGGGAGGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAG
atctaat putative branch site (score: 87)
tctgctt putative PPT
tataaatctaatga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acacatttgtatttttcatattgaagttttaaattccaatcacacttaagtataaatctaatgaccttttatcttttggttttgaaacgaatctgcttagGCTGCCAGTTTTGGTGGGTCCAATATCGATCCTACTGCATGGGAGGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - -tgtattt
- - - - - - - ttcatat
- - - - - - - - - - - - - - - - - -ccaatca