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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aatctaaagcaatgaaaaactgccttttatgcatggtcttgagtttaagtaatcaaattaactgctgtaaaatcttagtttcttgtcttgatgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCTGGTGATCTGGTTGGAGTCAATAAAGATAGCTACCTTATACTAGATACAT

Basic information

species Zea mays
transcript GRMZM2G032505_T03
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G032505_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os06g07630.1 (Oryza sativa), 3'ss of exon 3
aatctaaagcaatgaaaaactgccttttatgcatggtcttgagtttaa---gtaatcaaattaactgctgtaaaatcttagtttcttgtcttgatgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCTGGTGATCTGGTTGGAGTCAATAAAGATAGCTACCTTATACTAGATACAT
    |||     |  |    |     | |   || ||    |    ||   | ||||||| | | |  |||||||| |   ||  |  | ||   ||||||||||||||||||||||||| ||||||||||| |||||||| || || |||||||||||| |||||||||| || ||||| |||||||||||||| || ||| 
--cataatattttttaggcttaagcatgacttatagttcaaaaaaaaaagagaaatcaaactcatttttgtaaaatatcctttgttcctattt-cgattgcagACTATATTCCTTCCTGTGGTTGGGCTAGTTGACCCTGATAAACTCAAGCCTGGTGATTTGGTTGGAGTAAACAAAGACAGCTACCTTATACTGGACACAC

upper sequence: GRMZM2G032505_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA20G38030.1 (Glycine max), 3'ss of exon 3
------------------------------------------------aatctaaagcaatgaaa--------aactgccttttatgcatggtctt---gagtttaagtaatcaaattaactgctgtaaaatcttagtttcttg-----tcttgatgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCTGGTGATCTGGTTGGAGTCAATAAAGATAGCTACCTTATACTAGATACAT
                                                | | |||     |   |        |  |    ||     ||| | ||   |||   |||   | |    |  |   |  ||   | || ||  |      |  |  ||| ||||||| || || || |||||||||||||| || |||||||||||| |||| || |||||||||||||| || || || ||||| ||| | ||  | |||||  
gtgacatggactaggatttcatattgtcatctgatgttcctatatcatagtttaagattgttttatttgttatagttattgttatcttatgcttttaacgaggacaagctcttagtacatttttcggtaaccttgagcttaataatgttttcttttgactgcagACAATCTTTCTACCTGTTGTTGGGCTTGTTGACCCTGACAAGTTAAAACCCGGTGATCTGGTTGGTGTTAACAAGGATAGTTACTTAATCTTGGATACCC

upper sequence: GRMZM2G032505_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA10G29250.1 (Glycine max), 3'ss of exon 3
--------------aatctaaagcaatgaaaaactgccttttatgcatggtcttgagtttaagtaatcaaattaactgctgtaaaatcttagtttcttgtcttgatgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCTGGTGATCTGGTTGGAGTCAATAAAGATAGCTACCTTATACTAGATACAT
               || | |    ||   |  ||       | | |  |   | |||  ||     || |||   |        | |||| ||   | |  |  ||| ||||||| || || || |||||||||||||| || |||||||||||| |||| ||||||||||||||||| || || || ||||| ||| | ||  | ||||| |
gtgacatggacgatgatttcatattatcttattcttttagcgaggaaaagctctcagtacaatagtacatatttctttaatcttgagcttaattatgttttcttttgactgcagACAATCTTTCTACCTGTTGTTGGGCTTGTTGACCCTGACAAGTTAAAACCTGGTGATCTGGTTGGTGTTAACAAGGATAGTTACTTAATCTTGGATACCT

upper sequence: GRMZM2G032505_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA03G39500.1 (Glycine max), 3'ss of exon 3
-------aatctaaagcaatgaaaaactgccttttatgcatggtcttgagtttaagtaatcaaattaactgctgtaaaatcttagtttcttgtcttgat-gattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCTGGTGATCTGGTTGGAGTCAATAAAGATAGCTACCTTATACTAGATACAT
         | |  | |  || ||||             ||||  |||   |||  |    ||   ||   ||  | | |  ||  || |  | |   | || || |||| || || ||||||||||||||||| || ||||||| |||| |||| ||||||||||||||||| || || |||||||| ||| |  |  | ||| |  
tgcatttcttttggatccttggaaaagca--------aaatgggtttggagttagttggcaaagaaaagccctcaatattaataaattatgttttcatttgactgtagACAATCTTTCTTCCTGTTGTTGGGCTTGTTGACCCTGCCAAGTTAAAACCTGGTGATCTGGTTGGTGTTAACAAAGATAGTTACTTAGTCTTGGATGCCC

upper sequence: GRMZM2G032505_T02 (Zea mays), 3'ss of exon 3
lower sequence: Vv14s0060g02260.t01 (Vitis vinifera), 3'ss of exon 3
aatctaaagcaatgaaaaactgccttttatgcatggt-cttgagtttaagtaatcaaattaactgctgtaaaatcttagtttcttgtcttgatgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCTGGTGATCTGGTTGGAGTCAATAAAGATAGCTACCTTATACTAGATACAT
 ||  |     |        |  ||||| |   ||   | | | ||    | ||  |   ||      |||||  ||| ||  |  | ||  ||| || |||| || || || |||||||||||||| || |||||||| ||| |||||||||||||| ||||||| || || |||||||||||| | ||  ||||||| |
-attaatgctcacatgtgtgtttcttttgtaattgaaacattacttattcttattcatcaaaaaaaaataaaacattacttattcttgttcttgactgtagACAATCTTTCTGCCTGTTGTTGGGCTCGTTGACCCTGATAAGTTAAAGCCTGGTGATTTGGTTGGGGTGAACAAAGATAGCTACTTAATCTTAGATACTT

upper sequence: GRMZM2G032505_T02 (Zea mays), 3'ss of exon 3
lower sequence: Vv05s0020g01180.t01 (Vitis vinifera), 3'ss of exon 4
aatctaaagcaatgaaaaac-tgccttttatgcatggtcttgagtttaagtaatcaaat-----taactgctgtaaa-atcttagttt--cttgtcttgatgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCTGGTGATCTGGTTGGAGTCAATAAAGATAGCTACCTTATACTAGATACAT
          |||  ||  | | |  ||| ||| |||| |    |||   | ||   ||     ||| |  | | || ||  | || |  |||   ||    ||||||||| || ||  | |||||||||||||| || |||||||| ||||| || ||||||||  ||||||| || ||||||||||||||||| ||  | || ||  
---------gaatagaattcattcactttgtgcgtggtttatgtttttcatgatactatgtttataaataatatcaacatgcttgtctaactttcattccaaattgcagACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCTGGTGACTTGGTTGGGGTGAATAAAGATAGCTACCTGATCTTGGACACTC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78179300|gb|DV549673.1|DV549673
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA                         ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
EST: gi|211292087|gb|FL259244.1|FL259244
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA                         ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
EST: gi|47961752|gb|CN844461.1|CN844461
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA                         ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
EST: gi|211139388|gb|FL259181.1|FL259181
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA                         ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
EST: gi|149062853|gb|EE157572.2|EE157572
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA                         ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
EST: gi|211289944|gb|FL259225.1|FL259225
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA                         ACTATATTCCTTCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCT
EST: gi|211139394|gb|FL259187.1|FL259187
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA                         ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
EST: gi|211140323|gb|FL259190.1|FL259190
EST:     ACTCACAAAGGACAGGANAATGTGTTGTTCTGAAGACCTCCACAAGACAA                         ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
EST: gi|211287804|gb|FL259213.1|FL259213
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA                         ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
EST: gi|21843229|gb|BQ703810.1|BQ703810
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA                         ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
EST: gi|211287796|gb|FL259205.1|FL259205
EST:     ACTCACAAAGGANAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA                         ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGGCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
EST: gi|29130146|gb|CB380850.1|CB380850
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA                         ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
EST: gi|211138447|gb|FL259172.1|FL259172
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA                         ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
EST: gi|211140326|gb|FL259193.1|FL259193
EST:     ACTCACAAAGGGAAGGAAAATGTGTTGTTCTGAAGACCTYCACAAGGCAA                         ACTATATTCCTTCC
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCC
EST: gi|211289938|gb|FL259219.1|FL259219
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA                         ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAG
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAG
EST: gi|60346168|gb|DN213141.1|DN213141
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA                         ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
EST: gi|22715443|gb|BU197766.1|BU197766
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGGTCTGAAGACCTCCACAAGACAA                         ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAA
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAA
EST: gi|211292081|gb|FL259238.1|FL259238
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA                         ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
EST: gi|148979721|gb|EE026794.2|EE026794
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA                         ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
EST: gi|211292077|gb|FL259234.1|FL259234
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA                         ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACC-TGACAAGCTAAAG
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAG
EST: gi|211139393|gb|FL259186.1|FL259186
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA                         ACTATNATTCCTTCCTGTTNGTTGGGCTAGTGGACCCTGACAAGCTAAAGN
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTAT-ATTCCTTCCTGTT-GTTGGGCTAGTGGACCCTGACAAGCTAAAG-
EST: gi|211287805|gb|FL259214.1|FL259214
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA                         ACTATATTCCTTCCTGTTGTTGGGCTA
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTA
EST: gi|149077127|gb|EE165787.2|EE165787
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA                         ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
EST: gi|30306963|gb|CD001636.1|CD001636
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA                         ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
EST: gi|211139382|gb|FL259175.1|FL259175
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA                         ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
EST: gi|211289948|gb|FL259229.1|FL259229
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA                         ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
EST: gi|211287806|gb|FL259215.1|FL259215
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA                         ACTATATTCCTTCCTGTTGTTGGGCTAGTGGA
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGA
EST: gi|211139383|gb|FL259176.1|FL259176
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA                         ACTATATTCCTTCCTGTTGTT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTT
EST: gi|211292083|gb|FL259240.1|FL259240
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA                         ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACC-TGACAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
EST: gi|32823651|gb|CD963373.1|CD963373
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA                         ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
EST: gi|211287808|gb|FL259217.1|FL259217
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA                         ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACC-TGACAAGCTAAAGC-T
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
EST: gi|211294222|gb|FL259251.1|FL259251
EST:     ACTCACAAAGGAWAGGAAAATGTGTTGTTCTGAAGACCTCCACWAGACAA                         ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCT
EST: gi|211289943|gb|FL259224.1|FL259224
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA                         ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
EST: gi|211289937|gb|FL259218.1|FL259218
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA                         ACTATATTCCTTCCTGTTGTTGGGCTAGTGGA
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGA
EST: gi|211139387|gb|FL259180.1|FL259180
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA                         ACTATATTCCTTCCTGTTGTTGGGCTAGTGGA
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGA
EST: gi|6918347|gb|AW399877.1|AW399877
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGGTCTGAAGACCTCCACAAGACAA                         ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
EST: gi|149108219|gb|EE292563.2|EE292563
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA                         ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
EST: gi|211140333|gb|FL259200.1|FL259200
EST:     ACTCACAAAGGANAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA                         ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
EST: gi|149109720|gb|EE293507.2|EE293507
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA                         ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
EST: gi|211287803|gb|FL259212.1|FL259212
EST:     ACTCACAAAGGAWAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA                         ACTATATTCCTTCCTGTTGTTGGGCTAGTGGA
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGA
EST: gi|211294219|gb|FL259248.1|FL259248
EST:     ACTCACAAAGGAAAGGAAAATGTGTT-TTCTGAAGACCTCCACAAGACAA                         ACTATATTCCTTCCTGTTGTTGG
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGG
EST: gi|211138446|gb|FL259171.1|FL259171
EST:     ACTCACAAAGGANAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA                         ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
EST: gi|211292089|gb|FL259246.1|FL259246
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA                         ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
EST: gi|116820064|gb|EC863249.1|EC863249
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA                         ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
EST: gi|211289945|gb|FL259226.1|FL259226
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA                         ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
EST: gi|211140321|gb|FL259188.1|FL259188
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA                         ACTATATTCCTTCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCT
EST: gi|211289942|gb|FL259223.1|FL259223
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA                         ACTATATTCCTTCCTGTTGTTGGG
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGG
EST: gi|149100563|gb|EE186648.2|EE186648
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA                         ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
EST: gi|211139392|gb|FL259185.1|FL259185
EST:     ACTCACAAAGGAAAGGAAA-TGTGTTGTTCTGAAGACCTCCACAAGGCRA                         ACTATATTCCTTCCTGTTGTT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTT
EST: gi|211139384|gb|FL259177.1|FL259177
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACNA                         ACTATATTCCTTCCTGTTGGTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
EST: gi|149096589|gb|EE182348.2|EE182348
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA                         ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
EST: gi|71314217|gb|DR793724.1|DR793724
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA                         ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
EST: gi|211292090|gb|FL259247.1|FL259247
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA                         ACTATATTCCTTCCTGTTGTT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTT
EST: gi|26557803|gb|CA830038.1|CA830038
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA                         ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
EST: gi|211139390|gb|FL259183.1|FL259183
EST:     ACTCACAAAGGAAAGGAAAATGTGTTSTTCTGAAGACCTCCACAAGACAG                         ACTATATTCCTTCCTGTTG
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTG
EST: gi|149085416|gb|EE174922.2|EE174922
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA                         ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
EST: gi|74241694|gb|DT649608.1|DT649608
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA                         ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
EST: gi|148951330|gb|EC897040.2|EC897040
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA                         ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
EST: gi|149101527|gb|EE187650.2|EE187650
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA                         ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
EST: gi|101396024|gb|EB819941.1|EB819941
EST:     ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA                         ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taagtaatcaaattaactgctgtaaaatcttagtttcttgtcttgatgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCTGGTGATCTGGTTGGAGTCAATAAAGATAGCTACCTTATACTAGATACAT
                      taaaatcttagttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aatctaaagcaatgaaaaactgccttttatgcatggtcttgagtttaagtaatcaaattaactgctgtaaaatcttagtttcttgtcttgatgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCTGGTGATCTGGTTGGAGTCAATAAAGATAGCTACCTTATACTAGATACAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG