1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aatctaaagcaatgaaaaactgccttttatgcatggtcttgagtttaagtaatcaaattaactgctgtaaaatcttagtttcttgtcttgatgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCTGGTGATCTGGTTGGAGTCAATAAAGATAGCTACCTTATACTAGATACAT
species | Zea mays |
transcript | GRMZM2G032505_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCTEST: gi|148951330|gb|EC897040.2|EC897040
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
EST: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCTEST: gi|22473221|gb|BU037701.1|BU037701
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
EST: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCTEST: gi|22715443|gb|BU197766.1|BU197766
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
EST: ACTCACAAAGGAAAGGAAAATGTGTTGGTCTGAAGACCTCCACAAGACAA ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAEST: gi|149109720|gb|EE293507.2|EE293507
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAA
EST: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCTEST: gi|149085416|gb|EE174922.2|EE174922
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
EST: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCTEST: gi|22473395|gb|BU037875.1|BU037875
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
EST: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCTEST: gi|211077789|gb|FL088742.1|FL088742
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
EST: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA ACTATATTCCTTCCTGTTGTTGGGCTAGTEST: gi|148979721|gb|EE026794.2|EE026794
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGT
EST: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCTEST: gi|32823651|gb|CD963373.1|CD963373
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
EST: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCTEST: gi|149096589|gb|EE182348.2|EE182348
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
EST: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCTEST: gi|74241694|gb|DT649608.1|DT649608
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
EST: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCTEST: gi|116820064|gb|EC863249.1|EC863249
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
EST: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCTEST: gi|60346168|gb|DN213141.1|DN213141
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
EST: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCTEST: gi|149062853|gb|EE157572.2|EE157572
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
EST: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCTEST: gi|149077127|gb|EE165787.2|EE165787
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
EST: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCTEST: gi|78179300|gb|DV549673.1|DV549673
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
EST: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCTEST: gi|211077790|gb|FL088743.1|FL088743
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
EST: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAEST: gi|149100563|gb|EE186648.2|EE186648
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAA
EST: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAA ACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
genomic: ACTCACAAAGGAAAGGAAAATGTGTTGTTCTGAAGACCTCCACAAGACAAgtgagcaatc ... atgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCT
taagtaatcaaattaactgctgtaaaatcttagtttcttgtcttgatgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCTGGTGATCTGGTTGGAGTCAATAAAGATAGCTACCTTATACTAGATACAT
taaaatcttagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatctaaagcaatgaaaaactgccttttatgcatggtcttgagtttaagtaatcaaattaactgctgtaaaatcttagtttcttgtcttgatgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCTGGTGATCTGGTTGGAGTCAATAAAGATAGCTACCTTATACTAGATACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - -atgaaaaa
- - - - - - - - - - tgccttt
- - - - - - - - - - - - - - -tgcatgg
- - - - - - - - - - - - - - - - - - - - - - - - - aatcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actgctg