1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagcctaattccctttatcatcgcacagctcaattgttaataggattcataatacatctttcacttaccatttgtatagATATATGGTAACAAGTTAGACAGTTTTATGAGAAACTTTGAGAAATCATTCAGCAGCACATTGACAACGCTTCATCTTGTTAATGAGATGCCTGTCTATG
species | Zea mays |
transcript | GRMZM2G032447_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATCTGTACATCGGCAGTGAAGGAATCATTGAGAAAT ATATATGGTAACAAGTTAGACAGTTTTATGAGAAACTTTGAGAAATCATTCEST: gi|211230112|gb|FL407869.1|FL407869
genomic: ATCTGTACATCGGCAGTGAAGGAATCATTGAGAAATgtaagcctaa ... atttgtatagATATATGGTAACAAGTTAGACAGTTTTATGAGAAACTTTGAGAAATCATTC
EST: ATCTGTACATCGGCAGTGAAGGAATCATTGAGAAAT ATATATGGTAACAAGTTANACAGTTTTATGAGAAACTTTGAGAAATCATTCEST: gi|211500775|gb|FL109952.1|FL109952
genomic: ATCTGTACATCGGCAGTGAAGGAATCATTGAGAAATgtaagcctaa ... atttgtatagATATATGGTAACAAGTTAGACAGTTTTATGAGAAACTTTGAGAAATCATTC
EST: ATCTGTACATCGGCAGTGAAGGAATCATTGAGAAAT ATATATGGTAACAAGTTAGACAGTTTTATGAGAAACTTTGAGAAATCATTCEST: gi|149105705|gb|EE291269.2|EE291269
genomic: ATCTGTACATCGGCAGTGAAGGAATCATTGAGAAATgtaagcctaa ... atttgtatagATATATGGTAACAAGTTAGACAGTTTTATGAGAAACTTTGAGAAATCATTC
EST: ATCTGTACATCGGCAGTGAAGGAATCATTGAGAAAT ATATATGGTAACAAGTTAGACAGTTTTATGAGAAACTTTGAGAAATCATTCEST: gi|211223919|gb|FL407824.1|FL407824
genomic: ATCTGTACATCGGCAGTGAAGGAATCATTGAGAAATgtaagcctaa ... atttgtatagATATATGGTAACAAGTTAGACAGTTTTATGAGAAACTTTGAGAAATCATTC
EST: ATCTGTACATCGGGAGTGAAGGAATCATTGAGAAAT ATATATGGTAACAAGTTAGACAGTTTTATGAGAAACTTTGAGAAATCATTCEST: gi|71428252|gb|DR809302.1|DR809302
genomic: ATCTGTACATCGGCAGTGAAGGAATCATTGAGAAATgtaagcctaa ... atttgtatagATATATGGTAACAAGTTAGACAGTTTTATGAGAAACTTTGAGAAATCATTC
EST: ATCTGTACATCGGCAGTGAAGGAATCATTGAGAAAT ATATATGGTAACAAGTTAGACAGTTTTATGAGAAACTTTGAGAAATCATTCEST: gi|211048061|gb|FL385041.1|FL385041
genomic: ATCTGTACATCGGCAGTGAAGGAATCATTGAGAAATgtaagcctaa ... atttgtatagATATATGGTAACAAGTTAGACAGTTTTATGAGAAACTTTGAGAAATCATTC
EST: ATCTGTACATCGGCAGTGAAGGAATCATTGAGAAAT ATATATGGTAACAAGTTAGACAGTTTTATGAGAAACTTTGAGAAATCATTCEST: gi|211273935|gb|FL428373.1|FL428373
genomic: ATCTGTACATCGGCAGTGAAGGAATCATTGAGAAATgtaagcctaa ... atttgtatagATATATGGTAACAAGTTAGACAGTTTTATGAGAAACTTTGAGAAATCATTC
EST: ATCTGTACATCGGCAGTGAAGGAATCATTGAGAAAT ATATATGGTAACAAGTTAGACAGTTTTATGAGAAACTTTGAGAAATCATTCEST: gi|211217736|gb|FL411409.1|FL411409
genomic: ATCTGTACATCGGCAGTGAAGGAATCATTGAGAAATgtaagcctaa ... atttgtatagATATATGGTAACAAGTTAGACAGTTTTATGAGAAACTTTGAGAAATCATTC
EST: ATCTGTACATCGGCAGTGAAGGAATCATTGAGAAAT ATATATGGTAACAAGTTAGACAGTTTTATGAGAAACTTTGAGAAATCATTCEST: gi|211500776|gb|FL109953.1|FL109953
genomic: ATCTGTACATCGGCAGTGAAGGAATCATTGAGAAATgtaagcctaa ... atttgtatagATATATGGTAACAAGTTAGACAGTTTTATGAGAAACTTTGAGAAATCATTC
EST: ATCTGTACATCGGCAGTGAAGGAATCATTGAGAAAT ATATATGGTAACAAGTTAGACAGTTTTATGAGAAACTTTGAGAAATCATTCEST: gi|211480085|gb|FL429875.1|FL429875
genomic: ATCTGTACATCGGCAGTGAAGGAATCATTGAGAAATgtaagcctaa ... atttgtatagATATATGGTAACAAGTTAGACAGTTTTATGAGAAACTTTGAGAAATCATTC
EST: ATCTGTACATCGGCAGTGAAGGAATCATTGAGAAAT ATATATGGTAACAAGTTAGACAGTTTTATGAGAAACTTTGAGAAATCATTCEST: gi|211464166|gb|FL410745.1|FL410745
genomic: ATCTGTACATCGGCAGTGAAGGAATCATTGAGAAATgtaagcctaa ... atttgtatagATATATGGTAACAAGTTAGACAGTTTTATGAGAAACTTTGAGAAATCATTC
EST: ATCTGTACATCGGCAGTGAAGGAATCATTGAGAAAT ATATATGGTAACAAGTTAGACAGTTTTATGAGAAACTTTGAGAAATCATTCEST: gi|38687664|gb|CK144695.1|CK144695
genomic: ATCTGTACATCGGCAGTGAAGGAATCATTGAGAAATgtaagcctaa ... atttgtatagATATATGGTAACAAGTTAGACAGTTTTATGAGAAACTTTGAGAAATCATTC
EST: ATCTGTACATCGGCAGTGAAGGAATCATTGAGAAAT ATATATGGTAACAAGTTAGACAGTTTTATGAGAAACTTTGAGAAATCATTC
genomic: ATCTGTACATCGGCAGTGAAGGAATCATTGAGAAATgtaagcctaa ... atttgtatagATATATGGTAACAAGTTAGACAGTTTTATGAGAAACTTTGAGAAATCATTC
acagctcaattgttaataggattcataatacatctttcacttaccatttgtatagATATATGGTAACAAGTTAGACAGTTTTATGAGAAACTTTGAGAAATCATTCAGCAGCACATTGACAACGCTTCATCTTGTTAATGAGATGCCTGTCTATG
cacttac putative branch site (score: 2)
aattgttaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcctaattccctttatcatcgcacagctcaattgttaataggattcataatacatctttcacttaccatttgtatagATATATGGTAACAAGTTAGACAGTTTTATGAGAAACTTTGAGAAATCATTCAGCAGCACATTGACAACGCTTCATCTTGTTAATGAGATGCCTGTCTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG