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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtcggtcgataatttcatttgcatttgttcattctgtggtttcagagctgctatgaatccaatgtgctcaagtgtggattgtgaatgcagTACCTGAGACACCAAGGAGGAGCTACCGGAAGCTCTTGTCGACCATGATAGGGGATAAACTCTGGGATGAGAATGGAAAAGACAGAAGGTGTGTGTCTCG

Basic information

species Zea mays
transcript GRMZM2G032337_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G032337_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os11g08950.1 (Oryza sativa), 3'ss of exon 4
gtatgtcggtcg-ataatttcatttgca-tttgttc--attctgtggtttcagagctgctatgaatcca--atgtgctcaagtgtggattgtg-aatgcagTACCTGAGACACCAAGGAGGAGCTACCGGAAGCTCTTGTCGACCATGATAGGGGATAAACTCTGGGATGAGAATGGAAAAGACAGAAGGTGTGTGTCTCG
|||||    ||  | |||||||||| || ||| |||  |||   |||  |  | || ||| | ||| ||  || |||| |||| || |   || ||||||||  | ||||||||||||||||| |||||||||||| || |  |  |||| ||||| |||||  ||||||||  || | |||| |  ||||   | |  ||
gtatgctactcacacaatttcattttcagtttattctcatttcttggcat--gggcggctgtaaattcagcatatgctgaagtctgtaaaatggaatgcagTGACAGAGACACCAAGGAGGAGTTACCGGAAGCTCCTGACTTCTGTGATTGGGGAGAAACTTCGGGATGAGTGTGAACAAGATAACAGGTCCATTTTCCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86469754|gb|DY236124.1|DY236124
EST:     AGATGCTGGTCACGGGTTGCAACATGAACTGTACCAAAGCAATACCACGA                         TACCTGAGACACCAAGGAGGAGCTACCGGAAGCTCTTGTCGACCATGATAG
genomic: AGATGCTGGTCACGGGTTGCAACATGAACTGTACCAAAGCAATACCACGAgtatgtcggt ... gtgaatgcagTACCTGAGACACCAAGGAGGAGCTACCGGAAGCTCTTGTCGACCATGATAG
EST: gi|28931384|gb|CB334745.1|CB334745
EST:     AGATGCTGGTCACGGGTTGCAACATGAACTGTACCAAAGCAATACCACGA                         TACCTGAGACACCAAGGAGGAGCTACCGGAAGCTCTTGTCGACCATGATAG
genomic: AGATGCTGGTCACGGGTTGCAACATGAACTGTACCAAAGCAATACCACGAgtatgtcggt ... gtgaatgcagTACCTGAGACACCAAGGAGGAGCTACCGGAAGCTCTTGTCGACCATGATAG
EST: gi|76909164|gb|DV163254.1|DV163254
EST:     AGATGCTGGTCACGGGTTGCAACATGAACTGTACCAAAGCAATACCACGA                         TACCTGAGACACCAAGGAGGAGCTACCGGAAGCTCTTGTCGACCATGATAG
genomic: AGATGCTGGTCACGGGTTGCAACATGAACTGTACCAAAGCAATACCACGAgtatgtcggt ... gtgaatgcagTACCTGAGACACCAAGGAGGAGCTACCGGAAGCTCTTGTCGACCATGATAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtggtttcagagctgctatgaatccaatgtgctcaagtgtggattgtgaatgcagTACCTGAGACACCAAGGAGGAGCTACCGGAAGCTCTTGTCGACCATGATAGGGGATAAACTCTGGGATGAGAATGGAAAAGACAGAAGGTGTGTGTCTCG
                tatgaat  TA-rich tract