1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtgccaacattttgctgtgttcatcttctggaagtcgacattcctcatgttctagagggtcaggctttgctgaaaaattaattgtgtccagCTTGAGCCAATTGGTGCGTTGGATGGCCACAAAAGCTGAAGAGTTGGGTGTTGAAGTGTATCCAGGTTTTGCTGCTAGTGAG
species | Zea mays |
transcript | GRMZM2G032222_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCTTGGACACTACCATCTCCATTTGACAACAAAGGAAACTACGTGATCAG CTTGAGCCAATTGGTGCGTTGGATGGCCACAAAAGCTGAAGAGTTGGGTGTEST: gi|101387425|gb|EB815728.1|EB815728
genomic: GCTTGGACACTACCATCTCCATTTGACAACAAAGGAAACTACGTGATCAGgtgccaacat ... ttgtgtccagCTTGAGCCAATTGGTGCGTTGGATGGCCACAAAAGCTGAAGAGTTGGGTGT
EST: GCTTGGACACTACCATCTCCATTTGACAACAAAGGAAACTACGTGATCAG CTTGAGCCAATTGGTGCGTTGGATGGCCACAAAAGCTGAAGAGTTGGGTGTEST: gi|26557240|gb|CA829475.1|CA829475
genomic: GCTTGGACACTACCATCTCCATTTGACAACAAAGGAAACTACGTGATCAGgtgccaacat ... ttgtgtccagCTTGAGCCAATTGGTGCGTTGGATGGCCACAAAAGCTGAAGAGTTGGGTGT
EST: GCTTGGACACTACCATCTCCATTTGACAACAAAGGAAACTACGTGATCAG CTTGAGCCAATTGGTGCGTTGGATGGCCACAAAAGCTGAAGAGTTGGGTGTEST: gi|31353544|gb|CD437901.1|CD437901
genomic: GCTTGGACACTACCATCTCCATTTGACAACAAAGGAAACTACGTGATCAGgtgccaacat ... ttgtgtccagCTTGAGCCAATTGGTGCGTTGGATGGCCACAAAAGCTGAAGAGTTGGGTGT
EST: GCTTGGACACTACCATCTCCATTTGACAACAAAGGAAACTACGTGATCAG CTTGAGCCAATTGGTGCGTTGGATGGCCACAAAAGCTGAAGAGTTGGGTGTEST: gi|94479207|gb|EB708165.1|EB708165
genomic: GCTTGGACACTACCATCTCCATTTGACAACAAAGGAAACTACGTGATCAGgtgccaacat ... ttgtgtccagCTTGAGCCAATTGGTGCGTTGGATGGCCACAAAAGCTGAAGAGTTGGGTGT
EST: GCTTGGACACTACCCTCTCCATTTGACAACCAAGGAAACTACGTGATCCG CTTGAGCCCATTGGTGCCTTGGATGGCCEST: gi|148949255|gb|EC894698.2|EC894698
genomic: GCTTGGACACTACCATCTCCATTTGACAACAAAGGAAACTACGTGATCAGgtgccaacat ... ttgtgtccagCTTGAGCCAATTGGTGCGTTGGATGGCC
EST: GCTTGGACACTACCATCTCCATTTGACAACAAAGGAAACTACGTGATCAG CTTGAGCCAATTGGTGCGTTGGATGGCCACAAAAGCTGAAGAGTTGGGTGTEST: gi|148942934|gb|EC887978.2|EC887978
genomic: GCTTGGACACTACCATCTCCATTTGACAACAAAGGAAACTACGTGATCAGgtgccaacat ... ttgtgtccagCTTGAGCCAATTGGTGCGTTGGATGGCCACAAAAGCTGAAGAGTTGGGTGT
EST: GCTTGGACACTACCATCTCCATTTGACAACAAAGGAAACTACGTGATCAG CTTGAGCCAATTGGTGCGTTGGATGGCCACAAAAGCTGAAGAGTTGGGTGTEST: gi|24768393|gb|CA403522.1|CA403522
genomic: GCTTGGACACTACCATCTCCATTTGACAACAAAGGAAACTACGTGATCAGgtgccaacat ... ttgtgtccagCTTGAGCCAATTGGTGCGTTGGATGGCCACAAAAGCTGAAGAGTTGGGTGT
EST: GCTTGGACACTACCATCTCCATTTGACAACAAAGGAAACTACGTGATCAG CTTGAGCCAATTGGTGCGTTGGATGGCCACAAAAGCTGAAGAGTTGGGTGT
genomic: GCTTGGACACTACCATCTCCATTTGACAACAAAGGAAACTACGTGATCAGgtgccaacat ... ttgtgtccagCTTGAGCCAATTGGTGCGTTGGATGGCCACAAAAGCTGAAGAGTTGGGTGT
gacattcctcatgttctagagggtcaggctttgctgaaaaattaattgtgtccagCTTGAGCCAATTGGTGCGTTGGATGGCCACAAAAGCTGAAGAGTTGGGTGTTGAAGTGTATCCAGGTTTTGCTGCTAGTGAG
aattaat putative branch site (score: 39)
tgaaaaattaattgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgccaacattttgctgtgttcatcttctggaagtcgacattcctcatgttctagagggtcaggctttgctgaaaaattaattgtgtccagCTTGAGCCAATTGGTGCGTTGGATGGCCACAAAAGCTGAAGAGTTGGGTGTTGAAGTGTATCCAGGTTTTGCTGCTAGTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT