Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggccgcgccccggccaccattccaattgttgcgcgacgcagcgtgcatgggaggagccagcttaccattaggctgcgccacgcgtgccccggtgcgatggcgatgatgggtgggtgacgctgcttctttgtttgtttcccgcgtgcagGGCAAGGTGTCCCTCATCTCCTCGGCCGGCGTCCACCAGCTGCACATCTTCATCTTCGTGCTCGCGGTGTTCCATATCGTCTACAGCGTCGCCACCATGG

Basic information

species Zea mays
transcript GRMZM2G032219_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G032219_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os03g03700.2 (Oryza sativa), 3'ss of exon 3
gtgaggccgcgccccggccaccattccaattgttgcgcgacgcagcgtgcatgggaggagccagcttaccattaggctgcgccacgcg-tg--ccccggtgcgatggcgatgatgggtgggtgacgctgcttctttgtttgtttcccgcgtgcagGGCAAGGTGTCCCTCATCTCCTCGGCCGGCGTCCACCAGCTGCACATCTTCATCTTCGTGCTCGCGGTGTTCCATATCGTCTACAGCGTCGCCACCATGG
                                                |   |  |  |  | |||||   |   ||  || ||| || ||    |  | |  ||     ||     |    || | || || ||  || ||||      |||||||||||||| | || || || |||| |||| | |||||||||||||| ||||| ||||||||||||||||||||  ||  |||| |||||  ||||||||
------------------------------------------------gtgagcaaaaacgctgcttaatctgttgcaacgtcacacgatgatttcgagggaaattcaagtgcgaatttaacgatgatgatttttc-ttcgtttt-----tgcagGGCAAGGTGGCGCTGATGTCATCGGGCGGCATGCACCAGCTGCACATATTCATTTTCGTGCTCGCGGTGTTCCACGTCACCTACTGCGTCATCACCATGG

upper sequence: GRMZM2G032219_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os06g29110.1 (Oryza sativa), 3'ss of exon 3
gtgaggccgcgccccggccaccattccaattgttgcgcgacgcagcgtgcatgggaggagccagcttaccattaggctgcgccacgcgtg-ccccggtgcgatggcgatgatgggtgggtgacgctgcttctttgtttgtttcccgcgtgcagGGCAAGGTGTCCCTCATCTCCTCGGCCGGCGTCCACCAGCTGCACATCTTCATCTTCGTGCTCGCGGTGTTCCATATCGTCTACAGCGTCGCCACCATGG
                                                           |  ||  || ||  ||    || || ||    || || ||| ||  |  | ||   |   |     || || ||  |  |||| |    |||||||||||||| | || || ||  |     || | |||||||||||||| ||||||||||||||||| ||||||||| |   |||| |||||  ||||||||
-----------------------------------------------------------gtgagaataacaccagctgccggcaagcacaacctcgatgcaataac--taatt--taactataattgatttttcttgggttttc----tgcagGGCAAGGTGGCGCTGATGTCGGCAAAGAGCATGCACCAGCTGCACATTTTCATCTTCGTGCTCGCCGTGTTCCATGTTACCTACTGCGTCATCACCATGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcgatggcgatgatgggtgggtgacgctgcttctttgtttgtttcccgcgtgcagGGCAAGGTGTCCCTCATCTCCTCGGCCGGCGTCCACCAGCTGCACATCTTCATCTTCGTGCTCGCGGTGTTCCATATCGTCTACAGCGTCGCCACCATGG
                          ctgcttctttgtttgt  CT-rich tract
                                 tttgttt  TA-rich tract