1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaatgaagatcacttgatctgtgtacactccaaattatacttgacgtttcctgagctatgctgatcgtatagcctttttttactattagGGGAGATAGAAGAGCAGCTGAATATTTTAGAGGATCTGGCTCCTGATTTGATATCAAAGAAGATGATAAATGGAGGAGAAATACTTTATAG
species | Zea mays |
transcript | GRMZM2G032209_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGAACTTTTCCATAATATTCTTGCCAACAACTTGGAGATAGAAGAAATTG GGGAGATAGAAGAGCAGCTGAATATTTTAGAGGATCTGGCTCCTGATTTGAEST: gi|6828041|gb|AW331684.1|AW331684
genomic: GGAACTTTTCCATAATATTCTTGCCAACAACTTGGAGATAGAAGAAATTGgtaatgaaga ... ttactattagGGGAGATAGAAGAGCAGCTGAATATTTTAGAGGATCTGGCTCCTGATTTGA
EST: GGAACTTTTCCATAATATTCTTGCCAACAACTTGGAGATAGAAGAAATTG GGGAGATAGAAGAGCAGCTGAATATTTTAGAGGATCTGGCTCCTGATTTGAEST: gi|78021765|gb|DV490152.1|DV490152
genomic: GGAACTTTTCCATAATATTCTTGCCAACAACTTGGAGATAGAAGAAATTGgtaatgaaga ... ttactattagGGGAGATAGAAGAGCAGCTGAATATTTTAGAGGATCTGGCTCCTGATTTGA
EST: GGAACTTTTCCATAATATTCTTGCCAACAACTTGGAGATAGAAGAAATTG GGGAGATAGAAGAGCAGCTGAATATTTTAGAGGATCTGGCTCCTGATTTGAEST: gi|32931449|gb|CF036261.1|CF036261
genomic: GGAACTTTTCCATAATATTCTTGCCAACAACTTGGAGATAGAAGAAATTGgtaatgaaga ... ttactattagGGGAGATAGAAGAGCAGCTGAATATTTTAGAGGATCTGGCTCCTGATTTGA
EST: GGAACTTTTCCATAATATTCTTGCCAACAACTTGGAGATAGAAGAAATTG GGGAGATAGAAGAGCAGCTGAATATTTTAGAGGATCTGGCTCCTGATTTGAEST: gi|5706353|gb|AI942129.1|AI942129
genomic: GGAACTTTTCCATAATATTCTTGCCAACAACTTGGAGATAGAAGAAATTGgtaatgaaga ... ttactattagGGGAGATAGAAGAGCAGCTGAATATTTTAGAGGATCTGGCTCCTGATTTGA
EST: GGAACTTTTCCATAATATTCTTGCCAACAACTTGGAGATAGAAGAAATTG GGGAGATAGAAGAGCAGCTGAATATTTTAGAGGATCTGGCTCCTGATTTGAEST: gi|211501177|gb|FL470502.1|FL470502
genomic: GGAACTTTTCCATAATATTCTTGCCAACAACTTGGAGATAGAAGAAATTGgtaatgaaga ... ttactattagGGGAGATAGAAGAGCAGCTGAATATTTTAGAGGATCTGGCTCCTGATTTGA
EST: GGAACTTTTCCATAATATTCTTGCCAACAACTTGGAGATAGAAGAAATTG GGGAGATAGAAGAGCAGCTGAATATTTTAGAGGATCTGGCTCCTGATTTGAEST: gi|4753369|gb|AI657274.1|AI657274
genomic: GGAACTTTTCCATAATATTCTTGCCAACAACTTGGAGATAGAAGAAATTGgtaatgaaga ... ttactattagGGGAGATAGAAGAGCAGCTGAATATTTTAGAGGATCTGGCTCCTGATTTGA
EST: GGAACTTTTCCATAATATTCTTGCCAACAACTTGGAGATAGAAGAAATTG GGGAGATAGAAGAGCAGCTGAATATTTTAGAGGATCTGGCTCCTGATTTGA
genomic: GGAACTTTTCCATAATATTCTTGCCAACAACTTGGAGATAGAAGAAATTGgtaatgaaga ... ttactattagGGGAGATAGAAGAGCAGCTGAATATTTTAGAGGATCTGGCTCCTGATTTGA
ttatacttgacgtttcctgagctatgctgatcgtatagcctttttttactattagGGGAGATAGAAGAGCAGCTGAATATTTTAGAGGATCTGGCTCCTGATTTGATATCAAAGAAGATGATAAATGGAGGAGAAATACTTTATAG
tgctgat putative branch site (score: 10)
cctttttttactatt putative PPT
tttttttactatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgaagatcacttgatctgtgtacactccaaattatacttgacgtttcctgagctatgctgatcgtatagcctttttttactattagGGGAGATAGAAGAGCAGCTGAATATTTTAGAGGATCTGGCTCCTGATTTGATATCAAAGAAGATGATAAATGGAGGAGAAATACTTTATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA