1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atgtcattaatcctgagaaacttagttgagctctttgataaaatctcaatttagtgtgagccttatatatgtgttttctctgtaaaatcttgttgattagGTCCCTATCATTTTTCTTTCAACAGCCACACTAAAGGTCATATCAGCTACTATGTTACTAGTAAGGAGGGTGAAGATCCAGCGGTCTTCACCGGAGATAC
species | Zea mays |
transcript | GRMZM2G031825_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAGTTGTCACTTGGGAAGGACATTGAGATACTATGCCTACACACGCCTTG GTCCCTATCATTTTTCTTTCAACAGCCACACTAAAGGTCATATCAGCTACTEST: gi|32910981|gb|CF015793.1|CF015793
genomic: AAGTTGTCACTTGGGAAGGACATTGAGATACTATGCCTACACACGCCTTGgtatgctgtt ... tgttgattagGTCCCTATCATTTTTCTTTCAACAGCCACACTAAAGGTCATATCAGCTACT
EST: AAGTTGTCACTTGGGAAGGACATTGAGATACTATGCCTACACACGCCTTG GTCCCTATCATTTTTCTTTCAACAGCCACACTAA
genomic: AAGTTGTCACTTGGGAAGGACATTGAGATACTATGCCTACACACGCCTTGgtatgctgtt ... tgttgattagGTCCCTATCATTTTTCTTTCAACAGCCACACTAA
tcaatttagtgtgagccttatatatgtgttttctctgtaaaatcttgttgattagGTCCCTATCATTTTTCTTTCAACAGCCACACTAAAGGTCATATCAGCTACTATGTTACTAGTAAGGAGGGTGAAGATCCAGCGGTCTTCACCGGAGATAC
tcttgtt CT-rich tract
ttatatatgtgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtcattaatcctgagaaacttagttgagctctttgataaaatctcaatttagtgtgagccttatatatgtgttttctctgtaaaatcttgttgattagGTCCCTATCATTTTTCTTTCAACAGCCACACTAAAGGTCATATCAGCTACTATGTTACTAGTAAGGAGGGTGAAGATCCAGCGGTCTTCACCGGAGATAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT