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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactctaggttcctttggctaacctagatatcttttttgttacaaatgtccctctcattgaaaatgttctccaaacaatggtacagCTGGAAGAACAATGTGAAGCTAGAGCTGCCAGCTTAAGGTTGCTGCTCCTGTCCCCAAGATATAGTAGGGTAATATATCAGATAGGCAGGCCCCATACAC

Basic information

species Zea mays
transcript GRMZM2G031802_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G031802_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os11g28340.1 (Oryza sativa), 3'ss of exon 5
gtaactctaggttcctttggctaacctagatatctt-ttttgttacaaatgtccctctc-attgaaaatgttctccaaacaatggtacagCTGGAAGAACAATGTGAAGCTAGAGCTGCCAGCTTAAGGTTGCTGCTCCTGTCCCCAAGATATAGTAGGGTAATAT-----ATCAGATAGGCAGGCCCCATACAC
       ||  |  ||| |  | ||||    || |  || || ||| | ||| ||| || |||||  |    |||||||||||  | |||||||||||||||||||||||| ||||| ||||| | || |   |  || |    ||||||||   ||||  ||  |     |  ||||||  ||||   ||||| 
------gtatttgacttggttttaccttatcatttcattctgctactattgttcctttccattgacta----ctccaaacaatt-tgcagCTGGAAGAACAATGTGAAGCTGGAGCTACCAGCCTGAGCTCATTTTTCAT----CCAAGATAGGCTAGGTAAAACTTGTTAAATAGATAGAAAGGCATGATACA-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7136004|gb|AW498376.1|AW498376
EST:     ATAGTGCAAACTCTGTTGTATGCTGACTTCTTCTTTTATTACATAATGAG                         CTGGAAGAACAATGTGAAGCTAGAGCTGCCAGCTTAAGGTTGCTGCTCCTG
genomic: ATAGTGCAAACTCTGTTGTATGCTGACTTCTTCTTTTATTACATAATGAGgtaactctag ... aatggtacagCTGGAAGAACAATGTGAAGCTAGAGCTGCCAGCTTAAGGTTGCTGCTCCTG
EST: gi|5361053|gb|AI795668.1|AI795668
EST:     ATAGTGCAAACTCTGTTGTATGCTGACTTCTTCTTTTATTACATAATGAG                         CTGGAAGAACAATGTGAAGCTAGAGCTGCCAGCTTAAGGTTGCTGCTCCTG
genomic: ATAGTGCAAACTCTGTTGTATGCTGACTTCTTCTTTTATTACATAATGAGgtaactctag ... aatggtacagCTGGAAGAACAATGTGAAGCTAGAGCTGCCAGCTTAAGGTTGCTGCTCCTG
EST: gi|71425662|gb|DR806812.1|DR806812
EST:     ATAGTGCAAACTCTGTTGTATGCTGACTTCTTCTTTTATTACATAATGAG                         CTGGAAGAACAATGTGAAGCTAGAGCTGCCAGCTTAAGGTTGCTGCTCCTG
genomic: ATAGTGCAAACTCTGTTGTATGCTGACTTCTTCTTTTATTACATAATGAGgtaactctag ... aatggtacagCTGGAAGAACAATGTGAAGCTAGAGCTGCCAGCTTAAGGTTGCTGCTCCTG
EST: gi|211132529|gb|FL458973.1|FL458973
EST:     ATAGTGCAAACTCTGTTGTATGCTGACTTCTTCTTTTATTACATAATGAG                         CTGGAAGAACAATGTGAAGCTAGAGCTGCCAGCTTAAGGTTGCTGCTCCTG
genomic: ATAGTGCAAACTCTGTTGTATGCTGACTTCTTCTTTTATTACATAATGAGgtaactctag ... aatggtacagCTGGAAGAACAATGTGAAGCTAGAGCTGCCAGCTTAAGGTTGCTGCTCCTG
EST: gi|60356812|gb|DN223785.1|DN223785
EST:     ATAGTGCAAACTCTGTTGTATGCTGACTTCTTCTTTTATTACATAATGAG                         CTGGAAGAACAATGTGAAGCTAGAGCTGCCAGCTTAAGGTTGCTGCTCCTG
genomic: ATAGTGCAAACTCTGTTGTATGCTGACTTCTTCTTTTATTACATAATGAGgtaactctag ... aatggtacagCTGGAAGAACAATGTGAAGCTAGAGCTGCCAGCTTAAGGTTGCTGCTCCTG
EST: gi|71425663|gb|DR806813.1|DR806813
EST:     ATAGTGCAAACTCTGTTGTATGCTGACTTCTTCTTTTATTACATAATGAG                         CTGGAAGAACAATGTGAAGCTAGAGCTGCCAGCTTAAGGTTGCTGCTCCTG
genomic: ATAGTGCAAACTCTGTTGTATGCTGACTTCTTCTTTTATTACATAATGAGgtaactctag ... aatggtacagCTGGAAGAACAATGTGAAGCTAGAGCTGCCAGCTTAAGGTTGCTGCTCCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttttgttacaaatgtccctctcattgaaaatgttctccaaacaatggtacagCTGGAAGAACAATGTGAAGCTAGAGCTGCCAGCTTAAGGTTGCTGCTCCTGTCCCCAAGATATAGTAGGGTAATATATCAGATAGGCAGGCCCCATACAC
                         attgaaaat  TA-rich tract