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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatggttttttaactgtcaggagatagtatctgagataaaatcttagagttgttttggggttattatgaacgctattcagttgctatttctgttgcacagATCCCTTTATTGCTAAGATCAGACATATCGGGCAAACTACTGTTGGCAGCGCTGCAATTTTTGGGCTTTTCTTGGGGGCTGGGAGCTTGATTCACTGCGG

Basic information

species Zea mays
transcript GRMZM2G031625_T01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211313582|gb|FL415815.1|FL415815
EST:     GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG                         ATCCCTGGATTGCTAAAGATCAGACATATCGGGCAAACTACTGTTGGCAGC
genomic: GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAGgtacacatac ... tgttgcacagATCCCTTTATTGCTAA-GATCAGACATATCGGGCAAACTACTGTTGGCAGC
EST: gi|211112897|gb|FL386070.1|FL386070
EST:     GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG                         ATCCCTGGATTGCTAAAGATCAGACATATCGGGCAAACTACTGTTGGCAGC
genomic: GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAGgtacacatac ... tgttgcacagATCCCTTTATTGCTAA-GATCAGACATATCGGGCAAACTACTGTTGGCAGC
EST: gi|211305688|gb|FL424514.1|FL424514
EST:     GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG                         ATCCCTGGATTGCTAAAGATCAGACATATCGGGCAAACTACTGTTGGCAGC
genomic: GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAGgtacacatac ... tgttgcacagATCCCTTTATTGCTAA-GATCAGACATATCGGGCAAACTACTGTTGGCAGC
EST: gi|211315265|gb|FL392917.1|FL392917
EST:     GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG                         ATCCCTGGATTGCTAAAGATCAGACATATCGGGCAAACTACTGTTGGCAGC
genomic: GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAGgtacacatac ... tgttgcacagATCCCTTTATTGCTAA-GATCAGACATATCGGGCAAACTACTGTTGGCAGC
EST: gi|211341305|gb|FL394251.1|FL394251
EST:     GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG                         ATCCCTGGATTGCTAAAGATCAGACATATCGGGCAAACTACTGTTGGCAGC
genomic: GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAGgtacacatac ... tgttgcacagATCCCTTTATTGCTAA-GATCAGACATATCGGGCAAACTACTGTTGGCAGC
EST: gi|211447311|gb|FL370712.1|FL370712
EST:     GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG                         ATCCCTGGATTGCTAAAGATCAGACATATCGGGCAAACTACTGTTGGCAGC
genomic: GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAGgtacacatac ... tgttgcacagATCCCTTTATTGCTAA-GATCAGACATATCGGGCAAACTACTGTTGGCAGC
EST: gi|211439708|gb|FL416905.1|FL416905
EST:     GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG                         ATCCCTGGATTGCTAAAGATCAGACATATCGGGCAAACTACTGTTGGCAGC
genomic: GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAGgtacacatac ... tgttgcacagATCCCTTTATTGCTAA-GATCAGACATATCGGGCAAACTACTGTTGGCAGC
EST: gi|78179236|gb|DV549609.1|DV549609
EST:     GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG                         ATCCCTGGATTGCTAAAGATCAGACATATCGGGCAAACTACTGTTGGCAGC
genomic: GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAGgtacacatac ... tgttgcacagATCCCTTTATTGCT-AAGATCAGACATATCGGGCAAACTACTGTTGGCAGC
EST: gi|211529790|gb|FL373531.1|FL373531
EST:     GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG                         ATCCCTGGATTGCTAAAGATCAGACATATCGGGCAAACTACTGTTGGCAGC
genomic: GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAGgtacacatac ... tgttgcacagATCCCTTTATTGCTAA-GATCAGACATATCGGGCAAACTACTGTTGGCAGC
EST: gi|211212468|gb|FL408351.1|FL408351
EST:     GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG                         ATCCCTGGATTGCTAAAGATCAGACATATCGGGCAAACTACTGTTGGCAGC
genomic: GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAGgtacacatac ... tgttgcacagATCCCTTTATTGCTAA-GATCAGACATATCGGGCAAACTACTGTTGGCAGC
EST: gi|211029397|gb|FL376211.1|FL376211
EST:     GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG                         ATCCCTGGATTGCTAAAGATCAGACATATCGGGCAAACTACTGTTGGCAGC
genomic: GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAGgtacacatac ... tgttgcacagATCCCTTTATTGCTAA-GATCAGACATATCGGGCAAACTACTGTTGGCAGC
EST: gi|78026767|gb|DV495154.1|DV495154
EST:     GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG                         ATCCCTGGATTGCTAAAGATCAGACATATCGGGCAAACTACTGTTGGCAGC
genomic: GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAGgtacacatac ... tgttgcacagATCCCTTTATTGCT-AAGATCAGACATATCGGGCAAACTACTGTTGGCAGC
EST: gi|211214751|gb|FL397478.1|FL397478
EST:     GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG                         ATCCCTGGATTGCTAAAGATCAGACATATCGGGCAAACTACTGTTGGCAGC
genomic: GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAGgtacacatac ... tgttgcacagATCCCTTTATTGCTAA-GATCAGACATATCGGGCAAACTACTGTTGGCAGC
EST: gi|211042824|gb|FL411663.1|FL411663
EST:     GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG                         ATCCCTGGATTGCTAAAGATCAGACATATCGGGCAAACTACTGTTGGCAGC
genomic: GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAGgtacacatac ... tgttgcacagATCCCTTTATTGCT-AAGATCAGACATATCGGGCAAACTACTGTTGGCAGC
EST: gi|211341415|gb|FL403599.1|FL403599
EST:     GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG                         ATCCCTGGATTGCTAAAGATCAGACATATCGGGCAAACTACTGTTGGCAGC
genomic: GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAGgtacacatac ... tgttgcacagATCCCTTTATTGCTAA-GATCAGACATATCGGGCAAACTACTGTTGGCAGC
EST: gi|211030484|gb|FL428665.1|FL428665
EST:     GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG                         ATCCCTGGATTGCTAAAGATCAGACATATCGGGCAAACTACTGTTGGCAGC
genomic: GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAGgtacacatac ... tgttgcacagATCCCTTTATTGCTAA-GATCAGACATATCGGGCAAACTACTGTTGGCAGC
EST: gi|211154631|gb|FL370441.1|FL370441
EST:     GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG                         ATCCCTGGATTGCTAAAGATCAGACATATCGGGCAAACTACTGTTGGCAGC
genomic: GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAGgtacacatac ... tgttgcacagATCCCTTTATTGCTAA-GATCAGACATATCGGGCAAACTACTGTTGGCAGC
EST: gi|211451638|gb|FL374390.1|FL374390
EST:     GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG                         ATCCCTGGATTGCTAAAGATCAGACATATCGGGCAAACTACTGTTGGCAGC
genomic: GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAGgtacacatac ... tgttgcacagATCCCTTTATTGCTAA-GATCAGACATATCGGGCAAACTACTGTTGGCAGC
EST: gi|16918950|gb|BM073966.1|BM073966
EST:     GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG                         ATCCCTGGATTGCTAAAGATCAGACATATCGGGCAAACTACTGTTGGCAGC
genomic: GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAGgtacacatac ... tgttgcacagATCCCTTTATTGCTAA-GATCAGACATATCGGGCAAACTACTGTTGGCAGC
EST: gi|211364209|gb|FL423704.1|FL423704
EST:     GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG                         ATCCCTGGATTGCTAAAGATCAGACATATCGGGCAAACTACTGTTGGCAGC
genomic: GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAGgtacacatac ... tgttgcacagATCCCTTTATTGCTAA-GATCAGACATATCGGGCAAACTACTGTTGGCAGC
EST: gi|211216825|gb|FL370061.1|FL370061
EST:     GTGCTTGTTATGGAACTTTTGAGGCATTCGGATACAAG                         ATCCCTGGATTGCTAAAGATCAGACATATCGGGCAAACTACTGTTGGCAGC
genomic: GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAGgtacacatac ... tgttgcacagATCCCTTTATTGCTAA-GATCAGACATATCGGGCAAACTACTGTTGGCAGC
EST: gi|211364309|gb|FL429334.1|FL429334
EST:     GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG                         ATCCCTGGATTGCTAAAGATCAGACATATCGGGCAAACTACTGTTGGCAGC
genomic: GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAGgtacacatac ... tgttgcacagATCCCTTTATTGCTAA-GATCAGACATATCGGGCAAACTACTGTTGGCAGC
EST: gi|211147223|gb|FL386485.1|FL386485
EST:     GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG                         ATCCCTGGATTGCTAAAGATCAGACATATCGGGCAAACTACTGTTGGCAGC
genomic: GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAGgtacacatac ... tgttgcacagATCCCTTTATTGCTAA-GATCAGACATATCGGGCAAACTACTGTTGGCAGC
EST: gi|211392704|gb|FL395243.1|FL395243
EST:     GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG                         ATCCCTGGATTGCTAAAGATCAGACATATCGGGCAAACTACTGTTGGCAGC
genomic: GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAGgtacacatac ... tgttgcacagATCCCTTTATTGCTAA-GATCAGACATATCGGGCAAACTACTGTTGGCAGC
EST: gi|211221220|gb|FL370906.1|FL370906
EST:     GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG                         ATCCCTGGATTGCTAAAGATCAGACATATCGGGCAAACTACTGTTGGCAGC
genomic: GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAGgtacacatac ... tgttgcacagATCCCTTTATTGCTAA-GATCAGACATATCGGGCAAACTACTGTTGGCAGC
EST: gi|211298864|gb|FL392435.1|FL392435
EST:     GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG                         ATCCCTGGATTGCTAAAGATCAGACATATCGGGCAAACTACTGTTGGCAGC
genomic: GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAGgtacacatac ... tgttgcacagATCCCTTTATTGCTAA-GATCAGACATATCGGGCAAACTACTGTTGGCAGC
EST: gi|211334456|gb|FL398399.1|FL398399
EST:     GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG                         ATCCCTGGATTGCTAAAGATCAGACATATCGGGCAAACTACTGTTGGCAGC
genomic: GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAGgtacacatac ... tgttgcacagATCCCTTTATTGCTAA-GATCAGACATATCGGGCAAACTACTGTTGGCAGC
EST: gi|12046372|gb|BF728511.1|BF728511
EST:     GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG                         ATCCCTGGATTGCTAAAGATCAGACATATCGGGCAAACTACTGTTGGCAGC
genomic: GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAGgtacacatac ... tgttgcacagATCCCTTTATTGCT-AAGATCAGACATATCGGGCAAACTACTGTTGGCAGC
EST: gi|18163806|gb|BM333645.1|BM333645
EST:     GTGCTTGTTATGGAATTTTTGAGGCATTCAGATACAAG                         ATCCCTGGATTGCTAAAGATCAGACATATCGGGCAAACTACTGTTGGCAGC
genomic: GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAGgtacacatac ... tgttgcacagATCCCTTTATTGCT-AAGATCAGACATATCGGGCAAACTACTGTTGGCAGC
EST: gi|211526934|gb|FL381038.1|FL381038
EST:     GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG                         ATCCCTGGATTGCTAAAGATCAGACATATCGGGCAAACTACTGTTGGCAGC
genomic: GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAGgtacacatac ... tgttgcacagATCCCTTTATTGCTAA-GATCAGACATATCGGGCAAACTACTGTTGGCAGC
EST: gi|211418661|gb|FL411178.1|FL411178
EST:     GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG                         ATCCCTGGATTGCTAAAGATCAGACATATCGGGCAAACTACTGTTGGCAGC
genomic: GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAGgtacacatac ... tgttgcacagATCCCTTTATTGCT-AAGATCAGACATATCGGGCAAACTACTGTTGGCAGC
EST: gi|211022661|gb|FL411191.1|FL411191
EST:     GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG                         ATCCCTGGATTGCTAAAGATCAGACATATCGGGCAAACTACTGTTGGCAGC
genomic: GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAGgtacacatac ... tgttgcacagATCCCTTTATTGCTAA-GATCAGACATATCGGGCAAACTACTGTTGGCAGC
EST: gi|211099727|gb|FL381200.1|FL381200
EST:     GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG                         ATCCCTGGATTGCTAAAGATCAGACATATCGGGCAAACTACTGTTGGCAGC
genomic: GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAGgtacacatac ... tgttgcacagATCCCTTTATTGCTAA-GATCAGACATATCGGGCAAACTACTGTTGGCAGC
EST: gi|211397968|gb|FL395725.1|FL395725
EST:     GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG                         ATCCCTGGATTGCTAAAGATCAGACATATCGGGCAAACTACTGTTGGCAGC
genomic: GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAGgtacacatac ... tgttgcacagATCCCTTTATTGCTAA-GATCAGACATATCGGGCAAACTACTGTTGGCAGC
EST: gi|211259828|gb|FL427119.1|FL427119
EST:     GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG                         ATCCCTGGATTGCTAAAGATCAGACATATCGGGCAAACTACTGTTGGCAGC
genomic: GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAGgtacacatac ... tgttgcacagATCCCTTTATTGCTAA-GATCAGACATATCGGGCAAACTACTGTTGGCAGC
EST: gi|18170008|gb|BM339848.1|BM339848
EST:     GTGCTTGTTATGGAATTTTTGAGGCATTCAGATACAAG                         ATCCCTGGATTGCTAAAGATCAGACATATCGGGCAAACTACTGTTGGCAGC
genomic: GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAGgtacacatac ... tgttgcacagATCCCTTTATTGCTAA-GATCAGACATATCGGGCAAACTACTGTTGGCAGC
EST: gi|211346062|gb|FL392061.1|FL392061
EST:     GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG                         ATCCCTGGATTGCTAAAGATCAGACATATCGGGCAAACTACTGTTGGCAGC
genomic: GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAGgtacacatac ... tgttgcacagATCCCTTTATTGCTAA-GATCAGACATATCGGGCAAACTACTGTTGGCAGC
EST: gi|18162918|gb|BM332757.1|BM332757
EST:     GTGCTTGTTATGGAATTTTTGAGGCATTCAGATACAAG                         ATCCCTGGATTGCTAAAGATCAGACATATCGGGCAAACTACTGTTGGCAGC
genomic: GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAGgtacacatac ... tgttgcacagATCCCTTTATTGCT-AAGATCAGACATATCGGGCAAACTACTGTTGGCAGC
EST: gi|211194230|gb|FL384759.1|FL384759
EST:     GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG                         ATCCCTGGATTGCTAAAGATCAGACATATCGGGCAAACTACTGTTGGCAGC
genomic: GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAGgtacacatac ... tgttgcacagATCCCTTTATTGCTAA-GATCAGACATATCGGGCAAACTACTGTTGGCAGC
EST: gi|211259829|gb|FL427120.1|FL427120
EST:     GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG                         ATCCCTGGATTGCTAAAGATCAGACATATCGGGCAAACTACTGTTGGCAGC
genomic: GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAGgtacacatac ... tgttgcacagATCCCTTTATTGCTAA-GATCAGACATATCGGGCAAACTACTGTTGGCAGC
EST: gi|211128586|gb|FL429558.1|FL429558
EST:     GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG                         ATCCCTGGATTGCTAAAGATCAGACATATCGGGCAAACTACTGTTGGCAGC
genomic: GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAGgtacacatac ... tgttgcacagATCCCTTTATTGCTAA-GATCAGACATATCGGGCAAACTACTGTTGGCAGC
EST: gi|113701038|gb|EE678542.1|EE678542
EST:     GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG                         ATCCCTGGATTGCTAAAGATCAGACATATCGGGCAAACTACTGTTGGCAGC
genomic: GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAGgtacacatac ... tgttgcacagATCCCTTTATTGCT-AAGATCAGACATATCGGGCAAACTACTGTTGGCAGC
EST: gi|211482043|gb|FL394362.1|FL394362
EST:     GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG                         ATCCCTGGATTGCTAAAGATCAGACATATCGGGCAAACTACTGTTGGCAGC
genomic: GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAGgtacacatac ... tgttgcacagATCCCTTTATTGCT-AAGATCAGACATATCGGGCAAACTACTGTTGGCAGC
EST: gi|211439139|gb|FL388410.1|FL388410
EST:     GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG                         ATCCCTGGATTGCTAAAGATCAGACATATCGGGCAAACTACTGTTGGCAGC
genomic: GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAGgtacacatac ... tgttgcacagATCCCTTTATTGCTAA-GATCAGACATATCGGGCAAACTACTGTTGGCAGC
EST: gi|5058599|gb|AI737075.1|AI737075
EST:     GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG                         ATCCCTGGATTGCTAAAGATCAGACATATCGGGCAAACTACTGTTGGCAGC
genomic: GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAGgtacacatac ... tgttgcacagATCCCTTTATTGCT-AAGATCAGACATATCGGGCAAACTACTGTTGGCAGC
EST: gi|211206901|gb|FL385654.1|FL385654
EST:     GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG                         ATCCCTGGATTGCTAAAGATCAGACATATCGGGCAAACTACTGTTGGCAGC
genomic: GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAGgtacacatac ... tgttgcacagATCCCTTTATTGCTAA-GATCAGACATATCGGGCAAACTACTGTTGGCAGC
EST: gi|211101077|gb|FL442473.1|FL442473
EST:     GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAG                         ATCCCTGGATTGCTAAAGATCAGACATATCGGGCAAACTACTGTTGGCAGC
genomic: GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAGgtacacatac ... tgttgcacagATCCCTTTATTGCT-AAGATCAGACATATCGGGCAAACTACTGTTGGCAGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 41 (upstream exon), 42 (downstream exon)
Score: 20

GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAGgtacacatac ... tgttgcacagATCCCTTTATTGCTAAGATCAGACATATCGGGCAAACTACTGTTGGCAGCGCTGCAATTTTTGGGCTTTTCTTGGGGGCTGGGAGCTTGATTCACTGCGG


Block sizes: 36 (upstream exon), 44 (downstream exon)
Score: 6

GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAGgtacacatac ... tgttgcacagATCCCTTTATTGCTAAGATCAGACATATCGGGCAAACTACTGTTGGCAGCGCTGCAATTTTTGGGCTTTTCTTGGGGGCTGGGAGCTTGATTCACTGCGG


Block sizes: 47 (upstream exon), 48 (downstream exon)
Score: 13

GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAGgtacacatac ... tgttgcacagATCCCTTTATTGCTAAGATCAGACATATCGGGCAAACTACTGTTGGCAGCGCTGCAATTTTTGGGCTTTTCTTGGGGGCTGGGAGCTTGATTCACTGCGG


Block sizes: 41 (upstream exon), 49 (downstream exon)
Score: 37

GTGCTTGTTATGGAACTTTTGAGGCATTCAGATACAAGgtacacatac ... tgttgcacagATCCCTTTATTGCTAAGATCAGACATATCGGGCAAACTACTGTTGGCAGCGCTGCAATTTTTGGGCTTTTCTTGGGGGCTGGGAGCTTGATTCACTGCGG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agagttgttttggggttattatgaacgctattcagttgctatttctgttgcacagATCCCTTTATTGCTAAGATCAGACATATCGGGCAAACTACTGTTGGCAGCGCTGCAATTTTTGGGCTTTTCTTGGGGGCTGGGAGCTTGATTCACTGCGG
                                      ctatttct  CT-rich tract
               ttattatgaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tatggttttttaactgtcaggagatagtatctgagataaaatcttagagttgttttggggttattatgaacgctattcagttgctatttctgttgcacagATCCCTTTATTGCTAAGATCAGACATATCGGGCAAACTACTGTTGGCAGCGCTGCAATTTTTGGGCTTTTCTTGGGGGCTGGGAGCTTGATTCACTGCGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - -agataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cagttgc