1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gcactttcagtaaaaacgagtggcagttcagaaacaactaaatccaaatactgcttctgctatacagtcatatttttctaacaagtgaactttctcacagATTTTAACCCTACAGTGCAGACCAGTAGGAAAACAGGTATAATTGTTGGAGTCGTGGTTGGTGCAGCAGTTTTGGGAGTACTAGCACTTGCTGGACTCTG
species | Zea mays |
transcript | GRMZM2G031536_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTTTCGAGGCTACTATGGGCCTGCAATCTCAGCTTTCAGTGTAACGCCAA ATTTTAACCCTACAGTGCAGACCAGTAGGAAAACAGGTATAATTGTTGGAG
genomic: CTTTCGAGGCTACTATGGGCCTGCAATCTCAGCTTTCAGTGTAACGCCAAgtactcccct ... tttctcacagATTTTAACCCTACAGTGCAGACCAGTAGGAAAACAGGTATAATTGTTGGAG
aaatactgcttctgctatacagtcatatttttctaacaagtgaactttctcacagATTTTAACCCTACAGTGCAGACCAGTAGGAAAACAGGTATAATTGTTGGAGTCGTGGTTGGTGCAGCAGTTTTGGGAGTACTAGCACTTGCTGGACTCTG
ttctaac putative branch site (score: 11)
ctttctcac putative PPT
atatttttctaacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcactttcagtaaaaacgagtggcagttcagaaacaactaaatccaaatactgcttctgctatacagtcatatttttctaacaagtgaactttctcacagATTTTAACCCTACAGTGCAGACCAGTAGGAAAACAGGTATAATTGTTGGAGTCGTGGTTGGTGCAGCAGTTTTGGGAGTACTAGCACTTGCTGGACTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - -gtaaaaac
- - - - - - - - - - - - - - - - - caactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - gcttctg