Sequence
atgc intronic sequence ATGC exonic sequence...agtatatgcatttctttgtatcagcgatttagcattttttttgttactgtgtttggtgagcactctcgatttctcactcactgtgtactcctgtgaatagGACCCAGATGACACTTTGAAGCGCAAGACATTTGAGCTTCTTTATAAGATGACAAAGTCAACAAATGTTGAGGTGATTGTTGATAGGATGATTGAGTACA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G031352_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g68750.1 (Oryza sativa), 3'ss of exon 4
agtatatgcatttctttgtatcagcgatttagcattttttttgttactgtgtttg-gtgagcactctcgatttctcactcactgtgtactcctgtgaatagGACCCAGATGACACTTTGAAGCGCAAGACATTTGAGCTTCTTTATAAGATGACAAAGTCAACAAATGTTGAGGTGATTGTTGATAGGATGATTGAGTACA
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agtagatgcatgtcactgtgtcatcatcttta-gttggatgtgttatacttttcacactagcccttcttgtttctcactcagtgcggtttcttttgaacagGATCCTGATGACACTTTGAAACGCAAGACCTTCGAGCTTCTTTACAAGATGACAAAATCAACAAATGTTGAAGTGATTGTTGATCGAATGATTGAGTATA
upper sequence: GRMZM2G031352_T01 (Zea mays), 3'ss of exon 3
lower sequence: Vv02s0087g00690.t01 (Vitis vinifera), 3'ss of exon 4
agtatatgcatttctttgtatcagcgatt-tagcattttttttgttactgtgtttggtgagcactctcgatttctcactcactgtgtact---cctg-tga-atagGACCCAGATGACACTTTGAAGCGCAAGACATTTGAGCTTCTTTATAAGATGACAAAGTCAACAAATGTTGAGGTGATTGTTGATAGGATGATTGAGTACA
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-----atgttccctttcctattaatgcttatcaagaaagaaaaattgataagtt-ggtgtatcttctttgtattttaatccaagtttgatgtgcttgatgacacagGACCCAGATGATACTCTAAAGCGAAAAACCTTTGAGCTACTATATAGAATGACCAAGTCTTCAAATGTGGAAGTGATTGTTGATCGTATGATTGATTACA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.actgtgtttggtgagcactctcgatttctcactcactgtgtactcctgtgaatagGACCCAGATGACACTTTGAAGCGCAAGACATTTGAGCTTCTTTATAAGATGACAAAGTCAACAAATGTTGAGGTGATTGTTGATAGGATGATTGAGTACA
cactcac putative branch site (score: 2)
tactcct putative PPT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agtatatgcatttctttgtatcagcgatttagcattttttttgttactgtgtttggtgagcactctcgatttctcactcactgtgtactcctgtgaatagGACCCAGATGACACTTTGAAGCGCAAGACATTTGAGCTTCTTTATAAGATGACAAAGTCAACAAATGTTGAGGTGATTGTTGATAGGATGATTGAGTACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG