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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttggttctctttcagcgttgtgtccagtgtaagacaattcttggtatcgtgctgatgcctggcacttttttcttcagGTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTG

Basic information

species Zea mays
transcript GRMZM2G031308_T02
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211304744|gb|FL369602.1|FL369602
EST:     CTACCTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATT                         GTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
genomic: CTACCTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATTgtatgttggt ... ttttcttcagGTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
EST: gi|60354473|gb|DN221446.1|DN221446
EST:     CTACCTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATT                         GTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
genomic: CTACCTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATTgtatgttggt ... ttttcttcagGTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
EST: gi|22819201|gb|BU499291.1|BU499291
EST:     CTACCTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATT                         GTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
genomic: CTACCTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATTgtatgttggt ... ttttcttcagGTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
EST: gi|60340794|gb|DN207767.1|DN207767
EST:     CTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATT                         GTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
genomic: CTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATTgtatgttggt ... ttttcttcagGTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
EST: gi|18161888|gb|BM331727.1|BM331727
EST:     CTACCTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATT                         GTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
genomic: CTACCTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATTgtatgttggt ... ttttcttcagGTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
EST: gi|166443826|gb|EG125230.1|EG125230
EST:     AGAAATTCCTAATT                         GTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
genomic: AGAAATTCCTAATTgtatgttggt ... ttttcttcagGTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
EST: gi|60343056|gb|DN210029.1|DN210029
EST:     CTACCTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATT                         GTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
genomic: CTACCTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATTgtatgttggt ... ttttcttcagGTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
EST: gi|20803130|gb|BQ294180.1|BQ294180
EST:     CTACCTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATT                         GTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
genomic: CTACCTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATTgtatgttggt ... ttttcttcagGTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
EST: gi|58029643|gb|CX725070.1|CX725070
EST:     CTACCTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATT                         GTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
genomic: CTACCTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATTgtatgttggt ... ttttcttcagGTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
EST: gi|60672324|gb|DN475087.1|DN475087
EST:     CTACCTTAAGGGAAATTGGGCATGGCCGTGATCTGAAAAAATTCCTAATT                         GTTTATTGCAGGTCTCTGGCTTCTTTCA
genomic: CTACCTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATTgtatgttggt ... ttttcttcagGTT-ATTGCAGGTCTCTGGCTTCTTTCA
EST: gi|211230553|gb|FL431915.1|FL431915
EST:     TACCTTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATT                         GTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
genomic: TACC-TTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATTgtatgttggt ... ttttcttcagGTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
EST: gi|78543726|gb|DV621224.1|DV621224
EST:     CTACCTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATT                         GTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
genomic: CTACCTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATTgtatgttggt ... ttttcttcagGTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
EST: gi|12046292|gb|BF728431.1|BF728431
EST:     ACCTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATT                         GTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
genomic: ACCTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATTgtatgttggt ... ttttcttcagGTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
EST: gi|211110393|gb|FL429146.1|FL429146
EST:     CTACCTTAAGGGAGATTGGGCATGGCCGTGATCTG-A-AAATTCCTAATT                         GTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
genomic: CTACCTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATTgtatgttggt ... ttttcttcagGTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
EST: gi|5706244|gb|AI942020.1|AI942020
EST:     CTACCTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATT                         GTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
genomic: CTACCTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATTgtatgttggt ... ttttcttcagGTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
EST: gi|6671481|gb|AW282159.1|AW282159
EST:     GAAGAAATTCCTAATT                         GTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
genomic: GAAGAAATTCCTAATTgtatgttggt ... ttttcttcagGTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
EST: gi|60398300|gb|DN231116.1|DN231116
EST:     CTACCTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATT                         GTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
genomic: CTACCTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATTgtatgttggt ... ttttcttcagGTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
EST: gi|32846671|gb|CD986352.1|CD986352
EST:     CTACCTTGAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATT                         GTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
genomic: CTACCTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATTgtatgttggt ... ttttcttcagGTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
EST: gi|211123058|gb|FL373668.1|FL373668
EST:     CTACCTTAAGGGAGATTGGGCATGGCCGYGATCTGAAGAAATTCCTAATT                         GTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
genomic: CTACCTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATTgtatgttggt ... ttttcttcagGTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
EST: gi|211230554|gb|FL431916.1|FL431916
EST:     TGATCTGAAGAAATTCCTAATT                         GTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
genomic: TGATCTGAAGAAATTCCTAATTgtatgttggt ... ttttcttcagGTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
EST: gi|78180944|gb|DV551317.1|DV551317
EST:     CTACCTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATT                         GTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
genomic: CTACCTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATTgtatgttggt ... ttttcttcagGTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
EST: gi|211481757|gb|FL381851.1|FL381851
EST:     CTACCTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATT                         GTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
genomic: CTACCTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATTgtatgttggt ... ttttcttcagGTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
EST: gi|149108100|gb|EE292450.2|EE292450
EST:     CTACCTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATT                         GTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
genomic: CTACCTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATTgtatgttggt ... ttttcttcagGTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
EST: gi|78080520|gb|DV508932.1|DV508932
EST:     CTACCTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATT                         GTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
genomic: CTACCTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATTgtatgttggt ... ttttcttcagGTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
EST: gi|211220401|gb|FL437612.1|FL437612
EST:     GAAATTCCTAATT                         GTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
genomic: GAAATTCCTAATTgtatgttggt ... ttttcttcagGTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
EST: gi|76017609|gb|DT944779.1|DT944779
EST:     CTACCTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATT                         GTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
genomic: CTACCTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATTgtatgttggt ... ttttcttcagGTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
EST: gi|67024523|gb|CO453272.1|CO453272
EST:     CTACCTTGAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATT                         GTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
genomic: CTACCTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATTgtatgttggt ... ttttcttcagGTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
EST: gi|30031873|gb|CB833724.1|CB833724
EST:     CTACCTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATT                         GTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
genomic: CTACCTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATTgtatgttggt ... ttttcttcagGTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
EST: gi|148958760|gb|EC905039.2|EC905039
EST:     CTACCTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATT                         GTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
genomic: CTACCTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATTgtatgttggt ... ttttcttcagGTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
EST: gi|6918437|gb|AW399967.1|AW399967
EST:     CTACCTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATT                         GTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
genomic: CTACCTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATTgtatgttggt ... ttttcttcagGTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
EST: gi|8666034|gb|BE186850.1|BE186850
EST:     GAAGAAATTCCTAATT                         GTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
genomic: GAAGAAATTCCTAATTgtatgttggt ... ttttcttcagGTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
EST: gi|166478704|gb|EG161584.1|EG161584
EST:     CGTGATCTGAAGAAATTCCTAATT                         GTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
genomic: CGTGATCTGAAGAAATTCCTAATTgtatgttggt ... ttttcttcagGTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
EST: gi|111991211|gb|EE332402.1|EE332402
EST:     CTACCTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATT                         GTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
genomic: CTACCTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATTgtatgttggt ... ttttcttcagGTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
EST: gi|22473080|gb|BU037560.1|BU037560
EST:     CTACCTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATT                         GTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
genomic: CTACCTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATTgtatgttggt ... ttttcttcagGTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
EST: gi|4827661|gb|AI668353.1|AI668353
EST:     CTACCTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATT                         GTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
genomic: CTACCTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATTgtatgttggt ... ttttcttcagGTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
EST: gi|149070242|gb|EE158642.2|EE158642
EST:     CTACCTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATT                         GTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
genomic: CTACCTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATTgtatgttggt ... ttttcttcagGTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
EST: gi|213168588|gb|FM186721.1|FM186721
EST:     CTACCTTGAGGGAGATTGGGCATGGCCGTGATCTGAAGGAATTCCTAATT                         GTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
genomic: CTACCTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATTgtatgttggt ... ttttcttcagGTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
EST: gi|38502736|gb|CF972596.1|CF972596
EST:     CTACCTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATT                         GTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
genomic: CTACCTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATTgtatgttggt ... ttttcttcagGTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
EST: gi|60397050|gb|DN229869.1|DN229869
EST:     CTACCTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATT                         GTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC
genomic: CTACCTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATTgtatgttggt ... ttttcttcagGTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 563

GGCTGTTAATGTTGCCCTGTCACTGAGATATGAGATCAACAGGGGCTTTGCTACCTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATTgtatgttggt ... ttttcttcagGTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 395

GGCTGTTAATGTTGCCCTGTCACTGAGATATGAGATCAACAGGGGCTTTGCTACCTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATTgtatgttggt ... ttttcttcagGTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTG


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 411

GGCTGTTAATGTTGCCCTGTCACTGAGATATGAGATCAACAGGGGCTTTGCTACCTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATTgtatgttggt ... ttttcttcagGTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 535

GGCTGTTAATGTTGCCCTGTCACTGAGATATGAGATCAACAGGGGCTTTGCTACCTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATTgtatgttggt ... ttttcttcagGTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccagtgtaagacaattcttggtatcgtgctgatgcctggcacttttttcttcagGTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTG
                           tgctgat  putative branch site (score: 535)
                                        cacttttttcttc  putative PPT
                                           ttttttctt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgttggttctctttcagcgttgtgtccagtgtaagacaattcttggtatcgtgctgatgcctggcacttttttcttcagGTTATTGCAGGTCTCTGGCTTCTTTCAGTTCTCGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC