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gtaagatctattttccttgaattggtacaagaattcatgtacagaatcgttacctctgtataatgtgccccttcctgttaactcatatttttgatacgatggaaagattccatgattctttctctatttgaatatataaatggtctattgctgcagATACCTCAAGGGAGCTTCAGATGAACATCTTTCTCAGTTTTTGCAGTTA
species | Zea mays |
transcript | GRMZM2G031107_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TACGTAAGATCAAATCTTTCTGATGATGGATTAAGAGAACGCATTCGTGG ATACCTCAAGGGAGCTTCAGATGAACATCTTTCTCAGTTTTTGCAGTTAEST: gi|37425326|gb|CF650403.1|CF650403
genomic: TACGCAAGATCAAATCTTTCTGATGATGGATTAAGAGAACGCATTCGTGGgtaagatcta ... attgctgcagATACCTCAAGGGAGCTTCAGATGAACATCTTTCTCAGTTTTTGCAGTTA
EST: TACGCAAGATCAAATCTTTCTGATGATGGATTAAGAGAACGCATTCGTGG ATACCTCAAGGGEST: gi|20301108|gb|BQ164051.1|BQ164051
genomic: TACGCAAGATCAAATCTTTCTGATGATGGATTAAGAGAACGCATTCGTGGgtaagatcta ... attgctgcagATACCTCAAGGG
EST: TACGCAAGATCAAATCTTTCTGATGATGGATTAAGAGAACGCATTCGTGG ATACCTCAAGGGAGCTTCAGATGAACATCTTTCTCAGCTTTTGCAGCTAEST: gi|33100725|gb|CF060685.1|CF060685
genomic: TACGCAAGATCAAATCTTTCTGATGATGGATTAAGAGAACGCATTCGTGGgtaagatcta ... attgctgcagATACCTCAAGGGAGCTTCAGATGAACATCTTTCTCAGTTTTTGCAGTTA
EST: ACGCAAGATCAAATCTTTCTGATGATGGATTAAGAGAACGCATTCGTGG ATACCTCAAGGGAGCTTCAGATGAACATCTTTCTCAGTTTTTGCAGTTAEST: gi|33103231|gb|CF063191.1|CF063191
genomic: ACGCAAGATCAAATCTTTCTGATGATGGATTAAGAGAACGCATTCGTGGgtaagatcta ... attgctgcagATACCTCAAGGGAGCTTCAGATGAACATCTTTCTCAGTTTTTGCAGTTA
EST: ACGCAAGATCAAATCTTTCTGATGATGGATTAAGAGAACGCATTCGTGG ATACCTCAAGGGAGCTTCAGATGAACATCTTTCTCAGTTTTTGCAGTTAEST: gi|78119964|gb|DV538348.1|DV538348
genomic: ACGCAAGATCAAATCTTTCTGATGATGGATTAAGAGAACGCATTCGTGGgtaagatcta ... attgctgcagATACCTCAAGGGAGCTTCAGATGAACATCTTTCTCAGTTTTTGCAGTTA
EST: TACGCAAGATCAAATCTTTCTGATGATGGATTAAGAGAACGCATTCGTGG ATACCTCAAGGGAGCTTCAGATGAACATCTTTCTCAGTTTTTGCAGTTA
genomic: TACGCAAGATCAAATCTTTCTGATGATGGATTAAGAGAACGCATTCGTGGgtaagatcta ... attgctgcagATACCTCAAGGGAGCTTCAGATGAACATCTTTCTCAGTTTTTGCAGTTA
gaaagattccatgattctttctctatttgaatatataaatggtctattgctgcagATACCTCAAGGGAGCTTCAGATGAACATCTTTCTCAGTTTTTGCAGTTA
attctttctctatttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagatctattttccttgaattggtacaagaattcatgtacagaatcgttacctctgtataatgtgccccttcctgttaactcatatttttgatacgatggaaagattccatgattctttctctatttgaatatataaatggtctattgctgcagATACCTCAAGGGAGCTTCAGATGAACATCTTTCTCAGTTTTTGCAGTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG