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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacttaccaactcttctttcctttgtaagattctatacatgaatgccacacttgagggataatgaggatgcacaattaatgcacctagGTTCTCGGTATCCCCTGGGATGTTGACACTGAAGGGTTACGAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAG

Basic information

species Zea mays
transcript GRMZM2G030902_T03
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G030902_T03 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g71770.1 (Oryza sativa), 3'ss of exon 2
gtaacttaccaactcttctttcctttgtaagattctatacatgaatgc-------cacacttgag--------ggataatgaggatgcacaattaatgcacctagGTTCTCGGTATCCCCTGGGATGTTGACACTGAAGGGTTACGAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAG
|||| |   |||   ||||   |||| || ||||||||| | |||||        || | || |         | | ||||| ||      ||| ||  || |||||||| || ||||| |||||||| ||||||||||| ||| |||||||||||| |||||||||||||||||||||||| ||||||||||||
gtaagtggacaatctttct---ctttttaggattctataaacgaatgtgtcctttcatagtttaatcattcatgaagaatgatgacatgagatttatttacttagGTTCTTGGAATCCCATGGGATGTGGACACTGAAGGATTAAGAGAGTACATGGGCAAGTTTGGACCCCTAGATGATTGCGTCGTCATGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16380186|gb|BI993362.1|BI993362
EST:     TTTTTGAACATTGATCTGTAGCCAGTGCTGCAATGGCTACAAAGCCTGTG                         GTTCTCGGTATCCCCTGGGATGTTGACCCTGAAGGGTTACGAGAGTACATG
genomic: TTTTTGAACATTGATCTGTAGCCAGTGCTGCAATGGCTACAAAGCTTGTGgtaacttacc ... atgcacctagGTTCTCGGTATCCCCTGGGATGTTGACACTGAAGGGTTACGAGAGTACATG
EST: gi|211330813|gb|FL315989.1|FL315989
EST:     TTTTTGAACATTGATCTGTAGCCAGTGCTGCAATGGCTACAAAGCTTGTG                         GTTCTCGGTATCCCCTGGGATGTTGACACTGAAGGGTTACGAGAGTACATG
genomic: TTTTTGAACATTGATCTGTAGCCAGTGCTGCAATGGCTACAAAGCTTGTGgtaacttacc ... atgcacctagGTTCTCGGTATCCCCTGGGATGTTGACACTGAAGGGTTACGAGAGTACATG
EST: gi|211099331|gb|FL362931.1|FL362931
EST:     TTTTTGAACATTGATCTGTAGCCAGTGCTGCAATGGCTACAAAGCTTGTG                         GTTCTCGGTATCCCCTGGGATGTTGACACTGAAGGGTTACGAGAGTACATG
genomic: TTTTTGAACATTGATCTGTAGCCAGTGCTGCAATGGCTACAAAGCTTGTGgtaacttacc ... atgcacctagGTTCTCGGTATCCCCTGGGATGTTGACACTGAAGGGTTACGAGAGTACATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatacatgaatgccacacttgagggataatgaggatgcacaattaatgcacctagGTTCTCGGTATCCCCTGGGATGTTGACACTGAAGGGTTACGAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAG
                                        aattaat  putative branch site (score: 3)
                                      acaattaat  TA-rich tract