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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcgcatttgaactgcgcccctcccctccgccgcagcacccagcccccttatgccatcccgctggtctcaacagctacactgtgttctctcgctcctcaccctgggtgctctgtaccgatgctagGCATGGACGGACGTCAAAGTGACTTCCCCTCAACTCTCGCGGGTGGCCACATATAAATTGTCCCTAAATAAAACGACGCTGCAATTGACGTCTTCAAG

Basic information

species Zea mays
transcript GRMZM2G030839_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G030839_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os03g14830.1 (Oryza sativa), 3'ss of exon 2
gtgagcgcatttgaactgcgcccctcccctccgccgcagcacccagcccccttatgccatcccgctggtctcaacagctacactgtgttctctcgctcctcaccctg--ggtgctctgtaccgatgctagGCATGGACGGACGTCAAAGTGACTTCCCCTCAACTCTCGCGGGTGGCCACATATAAATTGTCCCTAAATAAAACGACGCTGCAATTGACGTCTTCAAG
                                   |     |||   ||||  ||  | ||   |     | |  ||   ||  | |     | |||||| || |||  |     ||||||| || |||||| |||||||| || |||||||| || ||||| ||||| |||| |||||| || ||  | ||||| || ||| | ||||| || ||||||||||||||
-----------------------------------gtgagccccgagccccagatttc-tcgaacaaactttactagtagcatcgcggagaattgctccttactctgccgagcacctgtacc-atactagGCGTGGACGGATGTGAAAGTGACCTCTCCTCAGCTCTCCCGGGAGGCCACCTACAAGCTCTCCCTGAAGAAATCAACGCTCCAGTTGACGTCTTCAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acagctacactgtgttctctcgctcctcaccctgggtgctctgtaccgatgctagGCATGGACGGACGTCAAAGTGACTTCCCCTCAACTCTCGCGGGTGGCCACATATAAATTGTCCCTAAATAAAACGACGCTGCAATTGACGTCTTCAAG
                       tcctcac  putative branch site (score: 2)