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gtaatcattaaggtttttttcgacatgtacagaaagaaactaagacataacatgaagctaagtatggttgtttctgtgacatattttctctcagGTGAACAATGGGGCAACATTTGTCCGTGTTAATAAATTTAAAAACCCACGAGATGGGAACCCCTCATTGTTGGTTCAAG
species | Zea mays |
transcript | GRMZM2G030596_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCATTGCCGAGCTCCTTGACAATGCAATCGATGAG GTGAACAATGGGGCAACATTTGTCCGTGTTAATAAATTTTAAAACCCACGAEST: gi|76286071|gb|DV025639.1|DV025639
genomic: CCATTGCCGAGCTCCTTGACAATGCAATCGATGAGgtaatcatta ... tttctctcagGTGAACAATGGGGCAACATTTGTCCGTGTTAATAAATTTAAAAACCCACGA
EST: CCATTGCCGAGCTCCTTGACAATGCAATCGATGAG GTGAACAATGGGGCAACATTTGTCCGTGTTAATAAATTTAAAAACCCACGAEST: gi|91867858|gb|EB399825.1|EB399825
genomic: CCATTGCCGAGCTCCTTGACAATGCAATCGATGAGgtaatcatta ... tttctctcagGTGAACAATGGGGCAACATTTGTCCGTGTTAATAAATTTAAAAACCCACGA
EST: CCATTGCCGAGCTCCTTGACAATGCAATCGATGAG GTGAACAATGGGGCAACATTTGTCCGTGTTAATAAATTTAAAAACCCACGAEST: gi|78121768|gb|DV540152.1|DV540152
genomic: CCATTGCCGAGCTCCTTGACAATGCAATCGATGAGgtaatcatta ... tttctctcagGTGAACAATGGGGCAACATTTGTCCGTGTTAATAAATTTAAAAACCCACGA
EST: CCATTGCCGAGCTCCTTGACAATGCAATCGATGAG GTGAACAATGGGGCAACATTTGTCCGTGTTAATAAATTTAAAAACCCACGAEST: gi|78111592|gb|DV529989.1|DV529989
genomic: CCATTGCCGAGCTCCTTGACAATGCAATCGATGAGgtaatcatta ... tttctctcagGTGAACAATGGGGCAACATTTGTCCGTGTTAATAAATTTAAAAACCCACGA
EST: CCATTGCCGAGCTCCTTGACAATGCAATCGATGAG GTGAACAATGGGGCAACATTTGTCCGTGTTAATAAATTTAAAAACCCACGAEST: gi|78114931|gb|DV533319.1|DV533319
genomic: CCATTGCCGAGCTCCTTGACAATGCAATCGATGAGgtaatcatta ... tttctctcagGTGAACAATGGGGCAACATTTGTCCGTGTTAATAAATTTAAAAACCCACGA
EST: CCATTGCCGAGCTCCTTGACAATGCAATCGATGAG GTGAACAATGGGGCAACATTTGTCCGTGTTAATAAATTTAAAAACCCACGAEST: gi|78075870|gb|DV504304.1|DV504304
genomic: CCATTGCCGAGCTCCTTGACAATGCAATCGATGAGgtaatcatta ... tttctctcagGTGAACAATGGGGCAACATTTGTCCGTGTTAATAAATTTAAAAACCCACGA
EST: CCATTGCCGAGCTCCTTGACAATGCAATCGATGAG GTGAACAATGGGGCAACATTTGTCCGTGTTAATAAATTTAAAAACCCACGA
genomic: CCATTGCCGAGCTCCTTGACAATGCAATCGATGAGgtaatcatta ... tttctctcagGTGAACAATGGGGCAACATTTGTCCGTGTTAATAAATTTAAAAACCCACGA
ctaagacataacatgaagctaagtatggttgtttctgtgacatattttctctcagGTGAACAATGGGGCAACATTTGTCCGTGTTAATAAATTTAAAAACCCACGAGATGGGAACCCCTCATTGTTGGTTCAAG
acataac putative branch site (score: 30)
tattttctctc putative PPT
acatatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatcattaaggtttttttcgacatgtacagaaagaaactaagacataacatgaagctaagtatggttgtttctgtgacatattttctctcagGTGAACAATGGGGCAACATTTGTCCGTGTTAATAAATTTAAAAACCCACGAGATGGGAACCCCTCATTGTTGGTTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG