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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccagtcaggaattgctactcgtattcccattgttctggtacatttcaattatgtttgctgcacaattttttgcagACAAAGGCTGGAGATGCCAAGAAGAAGTAAGGGAGGAAGTTACTTGCCTTGCTCTTTCTCTCATCATAGGCTTTGGTTTGTTTAGGGTGGGGCTCCTTCC

Basic information

species Zea mays
transcript GRMZM2G029685_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G029685_T02 (Zea mays), 3'ss of exon 3
lower sequence: AT3G04920.1 (Arabidopsis thaliana), 3'ss of exon 4
------gtaccagtcaggaat--tgcta-ctcgtattccc-attgttctggtacatttcaattatgtttgctgcacaattttttgcagACAAAGGCTGGAGATGCCAAGAAGAAGTAAGGGAG-GAAGTTACTTGCCTTGCTCTTTCTCTCATCATAGGCTTTGGTTTGTTTAGGGTGGGGCTCCTTCC
       |||  ||      |  ||||| ||  | ||    |||||    |||   || ||  || | |  ||  |||| ||| ||||||||||||||| |||||||||||||||| ||     ||||  |    | ||    | |   |  |  |   |  |  |   |      |   | |  ||  
gtatgtatactggttttccctcttgctatcttctgtttttgattgtgactgta-gctttaagaatctgttttgatcaatgttt-gcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTTATCTTGTGGGTTCTTGTTCTCCATAATCAATCACCTTTTATGTTATTTG-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60397441|gb|DN230257.1|DN230257
EST:     GAAGGAACGTAAGAACAGGGCGAAGAAAATCCGTGGTGTGAAGAAG---A                         -CAAAGGCTGGAGATGCCAAGAAGAAGTAAGGGAGGAAGTTACTTGCCTTG
genomic: GAAGGAACGTAAGAACAGGGCGAAGAAAATCCGTGGTGTGAAGAAGGTGAgtaccagtca ... ttttttgcagACAAAGGCTGGAGATGCCAAGAAGAAGTAAGGGAGGAAGTTACTTGCCTTG
EST: gi|15079941|gb|BI388886.1|BI388886
EST:     GAAGGAACGTAAGAACAGGGCGAAGAAAATCCGTGGTGTGAAGAAG---A                         -CAAAGGCTGGAGATGCCAAGAAGAAGTAAGGGAGGAAATTACTTGCCTTG
genomic: GAAGGAACGTAAGAACAGGGCGAAGAAAATCCGTGGTGTGAAGAAGGTGAgtaccagtca ... ttttttgcagACAAAGGCTGGAGATGCCAAGAAGAAGTAAGGGAGGAAGTTACTTGCCTTG
EST: gi|60355885|gb|DN222858.1|DN222858
EST:     GAAGGAACGTAAGAACAGGGCGAAGAAAATCCGTGGTGTGAAGAAG---A                         -CAAAGGCTGGAGATGCCAAGAAGAAGTAAGGGAGGAAGTTACTTGCCTTG
genomic: GAAGGAACGTAAGAACAGGGCGAAGAAAATCCGTGGTGTGAAGAAGGTGAgtaccagtca ... ttttttgcagACAAAGGCTGGAGATGCCAAGAAGAAGTAAGGGAGGAAGTTACTTGCCTTG
EST: gi|16926632|gb|BM079700.1|BM079700
EST:     GAAGGAACGTAAGAACAGGGCGAAGAAAATCCGTGGTGTGAAGAAG---A                         -CAAAGGCTGGAGATGCCAAGAAGAAGTAAGGGAGGAAGTTACTTGCCTTG
genomic: GAAGGAACGTAAGAACAGGGCGAAGAAAATCCGTGGTGTGAAGAAGGTGAgtaccagtca ... ttttttgcagACAAAGGCTGGAGATGCCAAGAAGAAGTAAGGGAGGAAGTTACTTGCCTTG
EST: gi|37376305|gb|CF624665.1|CF624665
EST:     GAAGGAACGTAAGAACAGGGCGAAGAAAATCCGTGGTGTGAAGAAG---A                         -CAAAGGCTGGAGATGCCAAGAAGAAGTAAGGGAGGAAGTTACTTGCCTTG
genomic: GAAGGAACGTAAGAACAGGGCGAAGAAAATCCGTGGTGTGAAGAAGGTGAgtaccagtca ... ttttttgcagACAAAGGCTGGAGATGCCAAGAAGAAGTAAGGGAGGAAGTTACTTGCCTTG
EST: gi|113701166|gb|EE678670.1|EE678670
EST:     AAGAACAGGGCGAAGAAAATCCGTGGTTTGAAGAA---G-                         ACAAAGGCTGGAGATGCCAAGAAGAAGTAAGGGAGGAAGTTACTTGCCTTG
genomic: AAGAACAGGGCGAAGAAAATCCGTGGTGTGAAGAAGGTGAgtaccagtca ... ttttttgcagACAAAGGCTGGAGATGCCAAGAAGAAGTAAGGGAGGAAGTTACTTGCCTTG
EST: gi|5761771|gb|AI966819.1|AI966819
EST:     GAAAATCCGTGGTGTGAAGAA---G-                         ACAAAGGCTGGAGATGCCAAGAAGAAGTAAGGGAGGAAGTTACTTGCCTTG
genomic: GAAAATCCGTGGTGTGAAGAAGGTGAgtaccagtca ... ttttttgcagACAAAGGCTGGAGATGCCAAGAAGAAGTAAGGGAGGAAGTTACTTGCCTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtattcccattgttctggtacatttcaattatgtttgctgcacaattttttgcagACAAAGGCTGGAGATGCCAAGAAGAAGTAAGGGAGGAAGTTACTTGCCTTGCTCTTTCTCTCATCATAGGCTTTGGTTTGTTTAGGGTGGGGCTCCTTCC
                                             ttttttgc  CT-rich tract
                     atttcaattatgttt  TA-rich tract