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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attgaacatgacttgtcgatgcagttatgttgatgattatgcaccataattctaggtaggactaagaattgttacttacatggcacatttgtggttgcagCTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCCTAATGACCAATCCTCATATTGGGAACACTGGCGTTAATCCTG

Basic information

species Zea mays
transcript GRMZM2G029573_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G029573_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os02g47850.3 (Oryza sativa), 3'ss of exon 3
----------------------------------------------attga-acatgac--ttgtcgatgcagttatgttgatgatta--tgcaccata-attctaggtaggactaagaattgttacttacatggcacatttgt------------ggttgcagCTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCCTAATGACCAATCCTCATATTGGGAACACTGGCGTTAATCCTG
                                               |||| |  ||    ||||   | | | ||     |  | ||    || || | | |  ||    |  ||    || ||    ||| |  |||  |              || ||||| ||||| ||||||||||| |||||||| ||||||||||| |||||||| |||||||| || |||||||| |||||||| ||||||||||
gtaaatcaactaaccgtttgagtgatggcatttgtttcctgttgtggttgagatgtgcttattgttcttcctgatagagaaacaactaacctcatcaaatagttgagacgcgcgtactgcttattgacaacaggaaacaactaacctcatcaaatgggctgcagGTATCAAGAGATTTTGACTGATCCAAGCTATGCTGGTCAATTTGTCCTCATGACCAACCCACATATTGGAAACACTGGTGTTAATCCTG

upper sequence: GRMZM2G029573_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA06G15510.3 (Glycine max), 3'ss of exon 2
----attgaacatgacttgtcg-atgca-gttatgttgatgattatgcaccataattctaggtaggactaagaattgttacttacatggcacatttgtggttgcagCTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCCTAATGACCAATCCTCATATTGGGAACACTGGCGTTAATCCTG
        |  |||| |  | | ||||  ||| | ||  || || |||     |     |   ||   |  |  || ||  ||   | |    | ||   |  ||| ||||| || |||||||| ||||| ||||||||||| |||||||| || ||||| ||||| |||||||||||||||||| | |||  ||
gtgaggatactatgaatcttgggatgcgtgttctttttttggttttgc-ttgcatgctaaatgagtggttggttttctttgttgtgttgtgtgtgtg-attctcagGTATCAAGAAATTTTGACAGATCCTAGTTATGCTGGCCAGTTTGTGCTCATGACAAATCCACATATTGGGAACACTGGCATAAATTTTG

upper sequence: GRMZM2G029573_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA05G32190.1 (Glycine max), 3'ss of exon 2
attgaacatgacttgtcgatgcagttatgttgatgattatgcaccataattctaggtaggactaagaattgtt-acttacatggca-catttgt-ggttgcagCTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCCTAATGACCAATCCTCATATTGGGAACACTGGCGTTAATCCTG
  |||  ||||  |  |  |  |  ||    |    | || ||   | |   | | ||   | | |  |  ||   |||  |   |  || |||    ||||| ||||| || ||| | || ||||| |||||||||||||||||||| || ||||| ||||| |||||||| |||||||| || |||  ||
-gtgag-atgaactaactttatatataaaccggcattcattcaatctgagcatggatataccgatgtttcatttgtttatttaataatatctgttaactgcagGTATCAAGAAATTCTAACAGATCCTAGTTATGCTGGTCAGTTTGTACTGATGACAAATCCACATATTGGTAACACTGGTGTAAATTTTG

upper sequence: GRMZM2G029573_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA04G39390.1 (Glycine max), 3'ss of exon 2
---attgaac-atgacttgtcg-atgcagttatgttgatgattatgcaccata-attctaggtaggactaagaattgttacttacatggcacatttgtggttg-cagCTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCCTAATGACCAATCCTCATATTGGGAACACTGGCGTTAATCCTG
   |   ||| |||| |  | | |||    | | ||  | ||       | |  || ||   || |        || |   |    ||     | |||| ||  ||| ||||| || |||||||| ||||| ||||||||||| |||||||| || ||||| || || ||||||||||| |||||| | |||  ||
gtgaggaaactatgaatcttgggatgtgtgtttctttttcatggctttgcttgcatgctgaatatg-tggctggttttctttgttgtgttgtgtgtgtgattatcagGTATCAAGAAATTTTGACTGATCCTAGTTATGCTGGCCAGTTTGTGCTCATGACAAACCCACATATTGGGAATACTGGCATAAATTTTG

upper sequence: GRMZM2G029573_T01 (Zea mays), 3'ss of exon 3
lower sequence: AT3G27740.1 (Arabidopsis thaliana), 3'ss of exon 2
attgaacatgacttgtcgatgcagttatgttgatgattatgcaccataattctaggtaggactaagaattgttacttacatggcacatttgtggttgca-gCTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCCTAATGACCAATCCTCATATTGGGAACACTGGCGTTAATCCTG
       |||  ||||        ||   || || ||    |  || |  |    || |   | ||  |  | | |   |       |||||  ||| | | ||||| || ||||| || ||||| ||||||||||| |||||||| |||||||| || || || ||||| || ||||| || |||||||
-----gtatgttttgttc-----tttgatttcattatatcacctcaaagatt---gttgattttagcttactgaatcttagattttgtttgtttttggaagGTATCAAGAAATTTTAACTGATCCTAGTTATGCTGGGCAGTTTGTGCTAATGACAAACCCACAAATTGGTAATACTGGTGTCAATCCTG

upper sequence: GRMZM2G029573_T01 (Zea mays), 3'ss of exon 3
lower sequence: Vv04s0044g00550.t01 (Vitis vinifera), 3'ss of exon 2
attgaacatgacttgtcgatgcagttatgttga--tgattatgcaccata-attctaggtaggactaagaattgttactt-acatggcacatttgtggttgcagCTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCCTAATGACCAATCCTCATATTGGGAACACTGGCGTTAATCCTG
  ||    || ||| ||     |||||   |||  |||||  | |    | ||| |    | ||   | |  ||  | || | |||      |  |  |||||| |||||||| ||| | || || || ||||||||||||||||| ||| ||||||| ||||| |||||||| ||||| || || |||  ||
--tggctctg-cttatctgcaaagttaaaatgacctgattgaggagttgatattttgttcatgatccatatatggaagttgatatgtggttgtcata-ttgcagATATCAGGAAATTCTTACAGACCCTAGTTATGCTGGTCAGTTCGTCTTAATGACAAATCCACATATTGGCAACACGGGGGTAAATTTTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211516234|gb|FL052551.1|FL052551
EST:     GCTTCAGGAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGG                         CTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCCTAAT
genomic: GCTTCAGGAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGGgtaaatcatt ... gtggttgcagCTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCCTAAT
EST: gi|211087675|gb|FL052572.1|FL052572
EST:     GCTTCAGGAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGG                         CTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCCTAAT
genomic: GCTTCAGGAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGGgtaaatcatt ... gtggttgcagCTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCCTAAT
EST: gi|211518598|gb|FL052566.1|FL052566
EST:     GCTTCAGGAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGG                         CTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCCTAAT
genomic: GCTTCAGGAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGGgtaaatcatt ... gtggttgcagCTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCCTAAT
EST: gi|211516228|gb|FL052545.1|FL052545
EST:     GCTTCAGGAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGG                         CTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCCTAAT
genomic: GCTTCAGGAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGGgtaaatcatt ... gtggttgcagCTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCCTAAT
EST: gi|211516227|gb|FL052544.1|FL052544
EST:     GCTTCAGGAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGG                         CTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGGTCAGTTTGTCCTAA
genomic: GCTTCAGGAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGGgtaaatcatt ... gtggttgcagCTATCAGGAGATTTTGACCGATCCAAGTTATGCTGG-TCAGTTTGTCCTAA
EST: gi|31355937|gb|CD440294.1|CD440294
EST:     GCTTCAGGAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGG                         CTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCCTAAT
genomic: GCTTCAGGAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGGgtaaatcatt ... gtggttgcagCTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCCTAAT
EST: gi|211087674|gb|FL052571.1|FL052571
EST:     GCTTCAGGAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGG                         CTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTT
genomic: GCTTCAGGAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGGgtaaatcatt ... gtggttgcagCTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTT
EST: gi|211516229|gb|FL052546.1|FL052546
EST:     GCTTCAGGAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGG                         CTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCCTAAT
genomic: GCTTCAGGAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGGgtaaatcatt ... gtggttgcagCTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCCTAAT
EST: gi|31361816|gb|CD446173.1|CD446173
EST:     GCTTCAGGAACACAAGTTGGTGAAGCTGTTTTCAACACATCACTGACAGG                         CTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCCTAAT
genomic: GCTTCAGGAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGGgtaaatcatt ... gtggttgcagCTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCCTAAT
EST: gi|211516233|gb|FL052550.1|FL052550
EST:     GCTTCAGGAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGG                         CTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCCTAAT
genomic: GCTTCAGGAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGGgtaaatcatt ... gtggttgcagCTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCCTAAT
EST: gi|211087677|gb|FL052574.1|FL052574
EST:     GCTTCAGGAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGG                         CTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCCTAAT
genomic: GCTTCAGGAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGGgtaaatcatt ... gtggttgcagCTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCCTAAT
EST: gi|89248122|gb|DY619908.1|DY619908
EST:     GCTTCAGGAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGG                         CTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCCTAAT
genomic: GCTTCAGGAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGGgtaaatcatt ... gtggttgcagCTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCCTAAT
EST: gi|148969434|gb|EE020234.2|EE020234
EST:     GCTTCAGGAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGG                         CTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCCTAAT
genomic: GCTTCAGGAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGGgtaaatcatt ... gtggttgcagCTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCCTAAT
EST: gi|211518588|gb|FL052556.1|FL052556
EST:     CTTCAGBGAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGG                         CTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCCTAAT
genomic: CTTCAG-GAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGGgtaaatcatt ... gtggttgcagCTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCCTAAT
EST: gi|211087672|gb|FL052569.1|FL052569
EST:     GCTTCAGGAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGG                         CTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTG
genomic: GCTTCAGGAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGGgtaaatcatt ... gtggttgcagCTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTG
EST: gi|211518587|gb|FL052555.1|FL052555
EST:     GCTTCAGGAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGG                         CTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCCTAAT
genomic: GCTTCAGGAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGGgtaaatcatt ... gtggttgcagCTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCCTAAT
EST: gi|211516232|gb|FL052549.1|FL052549
EST:     GCTTCAGGAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGG                         CTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCCTAAT
genomic: GCTTCAGGAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGGgtaaatcatt ... gtggttgcagCTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCCTAAT
EST: gi|211289807|gb|FL254557.1|FL254557
EST:     GCTTCAGGAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGG                         CTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCCTAAT
genomic: GCTTCAGGAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGGgtaaatcatt ... gtggttgcagCTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCCTAAT
EST: gi|71764310|gb|DR962247.1|DR962247
EST:     GCTTCAGGAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGG                         CTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCCTAAT
genomic: GCTTCAGGAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGGgtaaatcatt ... gtggttgcagCTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCCTAAT
EST: gi|211518594|gb|FL052562.1|FL052562
EST:     GCTTCAGGAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGG                         CTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCCTAAT
genomic: GCTTCAGGAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGGgtaaatcatt ... gtggttgcagCTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCCTAAT
EST: gi|211518589|gb|FL052557.1|FL052557
EST:     GCTTCAGGAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGG                         CTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCCTAAT
genomic: GCTTCAGGAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGGgtaaatcatt ... gtggttgcagCTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCCTAAT
EST: gi|211087676|gb|FL052573.1|FL052573
EST:     GCTTCAGGAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGG                         CTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCCTAAT
genomic: GCTTCAGGAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGGgtaaatcatt ... gtggttgcagCTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCCTAAT
EST: gi|211087673|gb|FL052570.1|FL052570
EST:     GCTTCAGGAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGG                         CTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCCTAAT
genomic: GCTTCAGGAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGGgtaaatcatt ... gtggttgcagCTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCCTAAT
EST: gi|211516230|gb|FL052547.1|FL052547
EST:     GCTYCAGGAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGG                         CTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGKTCAGTTTGTCCTAA
genomic: GCTTCAGGAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGGgtaaatcatt ... gtggttgcagCTATCAGGAGATTTTGACCGATCCAAGTTATGCTGG-TCAGTTTGTCCTAA
EST: gi|211287670|gb|FL254548.1|FL254548
EST:     GCTTCAGGAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGG                         CTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCCTAAT
genomic: GCTTCAGGAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGGgtaaatcatt ... gtggttgcagCTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCCTAAT
EST: gi|211518600|gb|FL052568.1|FL052568
EST:     GCTTCAGGAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGG                         CTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCCTAAT
genomic: GCTTCAGGAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGGgtaaatcatt ... gtggttgcagCTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCCTAAT
EST: gi|211516235|gb|FL052552.1|FL052552
EST:     CTTCAGGAACACAAGTTGGGTGAAGTTGTTTTCAACACATCACTGACAGG                         CTATCAGGAGATTTTGACCGATCCAAGTTATGCTG
genomic: CTTCAGGAACACAAGTTGG-TGAAGTTGTTTTCAACACATCACTGACAGGgtaaatcatt ... gtggttgcagCTATCAGGAGATTTTGACCGATCCAAGTTATGCTG
EST: gi|211516231|gb|FL052548.1|FL052548
EST:     GCCTCAGGAACACAAGYTGGYGAAGTTGTTTTCAACACATCACTGACAGG                         CYATCAGGARATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCC
genomic: GCTTCAGGAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGGgtaaatcatt ... gtggttgcagCTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCC
EST: gi|211518596|gb|FL052564.1|FL052564
EST:     GCTTCAGGAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGG                         CTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCCTAAT
genomic: GCTTCAGGAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGGgtaaatcatt ... gtggttgcagCTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCCTAAT
EST: gi|211518597|gb|FL052565.1|FL052565
EST:     GCTTCAGGAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGG                         CTATCAGGAGATTTTGACCGATCCAAGTTATGGCTGGTC
genomic: GCTTCAGGAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGGgtaaatcatt ... gtggttgcagCTATCAGGAGATTTTGACCGATCCAAGTTATG-CTGGTC
EST: gi|211518593|gb|FL052561.1|FL052561
EST:     GCTTCAGGAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGG                         CTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCCTAAT
genomic: GCTTCAGGAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGGgtaaatcatt ... gtggttgcagCTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCCTAAT
EST: gi|211287675|gb|FL254553.1|FL254553
EST:     GCTTCAGGAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGG                         CTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCCTAAT
genomic: GCTTCAGGAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGGgtaaatcatt ... gtggttgcagCTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCCTAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataattctaggtaggactaagaattgttacttacatggcacatttgtggttgcagCTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCCTAATGACCAATCCTCATATTGGGAACACTGGCGTTAATCCTG
                           tacttac  putative branch site (score: 1)
                 taagaatt  TA-rich tract