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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgctttgctgcatgccattgtttactctacttttgttctcgttacttcattgatgtgacccagttgtaactaacttacaatgtacattttgtcaattcagGTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTCTGGAACCAATGTCATTAGGCCCAG

Basic information

species Zea mays
transcript GRMZM2G029566_T02
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211126134|gb|FL125776.1|FL125776
EST:     AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTG                         GTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTC
genomic: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTGgtatgtgttt ... gtcaattcagGTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTC
EST: gi|211459280|gb|FL072386.1|FL072386
EST:     AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTG                         GTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTC
genomic: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTGgtatgtgttt ... gtcaattcagGTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTC
EST: gi|32851376|gb|CD991057.1|CD991057
EST:     AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTG                         GTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTC
genomic: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTGgtatgtgttt ... gtcaattcagGTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTC
EST: gi|211459281|gb|FL072387.1|FL072387
EST:     AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTG                         GTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGT
genomic: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTGgtatgtgttt ... gtcaattcagGTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGT
EST: gi|211459279|gb|FL072385.1|FL072385
EST:     AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTG                         GTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTC
genomic: AATTGTGGATTCATCTTCCGAGGGCCGCAGACTCCAGTCAATCCAAATTGgtatgtgttt ... gtcaattcagGTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcattgatgtgacccagttgtaactaacttacaatgtacattttgtcaattcagGTTTTATCTTCCAGTAGGATACAATGGGCGAGCATCATCTATAGTTGTGTCTGGAACCAATGTCATTAGGCCCAG
                                         ttttgtc  CT-rich tract
                                     tacatttt  TA-rich tract