Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttttttttagtctgtcttcccgtctcttctgagggtaataacaaaggatcattgactaaatcatcgccaatgctctgctttggcaatgcagAGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTCTTTTGTTCTGTGCACCATGCAATGAATTGTGGATTCATCTTCCGAGGGC

Basic information

species Zea mays
transcript GRMZM2G029566_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G029566_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os02g10310.2 (Oryza sativa), 3'ss of exon 2
gtgagttttttttagtctgtcttcccgtctcttctgagggtaataacaaaggatcattgactaaatcatcgccaatgctctgctttggcaatgcagAGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTCTTTTGTTCTGTGCACCATGCAATGAATTGTGGATTCATCTTCCGAGGGC
||||| ||  |  | |     ||    ||| |  |  | | || |    | || |||| |  ||||||    |  | ||||| |||    ||  |||| || | ||||||| |||| ||||||||||| ||||  ||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||
gtgagcttgatcaactactcttt----tctttgttacgagaaacag--gatgaccatttatgaaatcactaac--ttctctgtttttatcatttagAGCGACACAGAGATGCTTCTGCCAATCACGGTAGGAGACTACACCGACTTCTTTTGTTCTGTGCACCATGCAAGGAATTGTGGGTTCATCTTCCGTGGGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211277946|gb|FK998815.1|FK998815
EST:     CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATG                         AGTGATATAGAGATGGTTCTAC
genomic: CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGATATAGAGATGGTTCTAC
EST: gi|211061692|gb|FK998762.1|FK998762
EST:     CGTCTTGCGTGACAACGAAGCACTGAAGGAACAAGTGTCTGGTACCAATG                         AGTGATTATAGAGATGGTTCTACCAATCACCGGTTGGAGGTTACACGGACC
genomic: CGTCTTGCGTGACAACGAAGCACTGA-GGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGAT-ATAGAGATGGTTCTACCAATCAC-GGTTGGAGGTTACACGGAC-
EST: gi|71328229|gb|DR800748.1|DR800748
EST:     CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATG                         AGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
genomic: CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
EST: gi|211274322|gb|FK998789.1|FK998789
EST:     CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATG                         AGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
genomic: CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
EST: gi|149044247|gb|EE047493.2|EE047493
EST:     CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATG                         AGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
genomic: CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
EST: gi|211277951|gb|FK998820.1|FK998820
EST:     CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTAC-AATG                         AGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
genomic: CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
EST: gi|211274317|gb|FK998784.1|FK998784
EST:     CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATG                         AGTGATATAGAGATGGTTCTAC-AATCACGGTTGGAGGTTACACGGACTTC
genomic: CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
EST: gi|29577168|gb|CB617280.1|CB617280
EST:     CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATG                         AGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
genomic: CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
EST: gi|149083775|gb|EE173140.2|EE173140
EST:     CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATG                         AGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
genomic: CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
EST: gi|211272515|gb|FK998777.1|FK998777
EST:     CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATG                         AGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
genomic: CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
EST: gi|149101399|gb|EE187518.2|EE187518
EST:     CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATG                         AGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
genomic: CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
EST: gi|148969714|gb|EE020586.2|EE020586
EST:     CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATG                         AGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
genomic: CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
EST: gi|211272511|gb|FK998773.1|FK998773
EST:     CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATG                         AGTGAATATAGAGATGGCTCTACCAATCNACGGTTGGAGGTTACACGGACT
genomic: CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGA-TATAGAGATGGTTCTACCAATC-ACGGTTGGAGGTTACACGGACT
EST: gi|211277944|gb|FK998813.1|FK998813
EST:     CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATG                         AGTGATATARAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
genomic: CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
EST: gi|60348819|gb|DN215792.1|DN215792
EST:     CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATG                         AGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
genomic: CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
EST: gi|211061694|gb|FK998764.1|FK998764
EST:     CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATG                         AGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
genomic: CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
EST: gi|211276144|gb|FK998808.1|FK998808
EST:     CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATG                         AGTGATATAGAGATGGTTCTACCAATAACGGTTGGAGGTTAC
genomic: CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTAC
EST: gi|211274329|gb|FK998796.1|FK998796
EST:     CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATG                         AGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
genomic: CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
EST: gi|211272505|gb|FK998767.1|FK998767
EST:     CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATG                         AGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
genomic: CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
EST: gi|149004521|gb|EE039090.2|EE039090
EST:     CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATG                         AGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
genomic: CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
EST: gi|211276140|gb|FK998804.1|FK998804
EST:     CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATG                         AGTGATATAGAGATGGTTCTACCAATCACGGTT
genomic: CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGATATAGAGATGGTTCTACCAATCACGGTT
EST: gi|211272513|gb|FK998775.1|FK998775
EST:     CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATG                         AGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
genomic: CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
EST: gi|211276135|gb|FK998799.1|FK998799
EST:     CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATG                         AGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
genomic: CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
EST: gi|149082178|gb|EE171359.2|EE171359
EST:     CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATG                         AGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
genomic: CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
EST: gi|211277948|gb|FK998817.1|FK998817
EST:     CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATG                         AGTGATATAGAGATGGTTCT
genomic: CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGATATAGAGATGGTTCT
EST: gi|91052883|gb|EB163301.1|EB163301
EST:     CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATG                         AGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
genomic: CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
EST: gi|148990772|gb|EE032185.2|EE032185
EST:     CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATG                         AGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
genomic: CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
EST: gi|148932701|gb|EC876670.2|EC876670
EST:     CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATG                         AGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
genomic: CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
EST: gi|211276139|gb|FK998803.1|FK998803
EST:     CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATG                         AGTGATATAGAGATGGTTCTACCAATCA
genomic: CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGATATAGAGATGGTTCTACCAATCA
EST: gi|148940815|gb|EC885642.2|EC885642
EST:     CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATG                         AGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
genomic: CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
EST: gi|148964333|gb|EC905725.2|EC905725
EST:     CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATG                         AGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
genomic: CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
EST: gi|211276134|gb|FK998798.1|FK998798
EST:     CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATG                         AGTGATATAGAGATGGTTCTACCAATCACGGTTGGA
genomic: CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGATATAGAGATGGTTCTACCAATCACGGTTGGA
EST: gi|78124353|gb|DV542737.1|DV542737
EST:     CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATG                         AGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
genomic: CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
EST: gi|148956082|gb|EC901838.2|EC901838
EST:     CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATG                         AGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
genomic: CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
EST: gi|148955041|gb|EC900548.2|EC900548
EST:     CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATG                         AGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
genomic: CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
EST: gi|211272519|gb|FK998781.1|FK998781
EST:     CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATG                         AGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGT
genomic: CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGT
EST: gi|148983240|gb|EE029206.2|EE029206
EST:     CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATG                         AGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
genomic: CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
EST: gi|211276145|gb|FK998809.1|FK998809
EST:     CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATG                         AGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGG
genomic: CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGG
EST: gi|149076833|gb|EE165488.2|EE165488
EST:     CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATG                         AGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
genomic: CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
EST: gi|149042087|gb|EE047065.2|EE047065
EST:     CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATG                         AGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
genomic: CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
EST: gi|211276137|gb|FK998801.1|FK998801
EST:     CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATG                         AGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
genomic: CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
EST: gi|148949167|gb|EC894603.2|EC894603
EST:     CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATG                         AGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
genomic: CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
EST: gi|71421618|gb|DR805518.1|DR805518
EST:     CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATG                         AGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
genomic: CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
EST: gi|148941367|gb|EC886277.2|EC886277
EST:     CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATG                         AGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
genomic: CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
EST: gi|148959990|gb|EE153229.2|EE153229
EST:     CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATG                         AGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
genomic: CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
EST: gi|76920587|gb|DV168250.1|DV168250
EST:     CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATG                         AGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
genomic: CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
EST: gi|211272514|gb|FK998776.1|FK998776
EST:     CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATG                         AGTGATATAGAGA
genomic: CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGATATAGAGA
EST: gi|149009361|gb|EE041411.2|EE041411
EST:     CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATG                         AGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
genomic: CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
EST: gi|148946154|gb|EC891448.2|EC891448
EST:     CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATG                         AGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
genomic: CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
EST: gi|211272510|gb|FK998772.1|FK998772
EST:     CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATG                         AGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
genomic: CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
EST: gi|211272518|gb|FK998780.1|FK998780
EST:     CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATG                         AGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
genomic: CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
EST: gi|211272507|gb|FK998769.1|FK998769
EST:     CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATG                         AGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
genomic: CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
EST: gi|211276146|gb|FK998810.1|FK998810
EST:     CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATG                         AGTGATATAGAGATGGT
genomic: CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGATATAGAGATGGT
EST: gi|211277943|gb|FK998812.1|FK998812
EST:     CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATG                         AGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
genomic: CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
EST: gi|89764162|gb|DY691069.1|DY691069
EST:     CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATG                         AGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC
genomic: CCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 45 (downstream exon)
Score: 41

CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTCTTTTGTTCTGTGCACCATGCAATGAATTGTGGATTCATCTTCCGAGGGC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 69

CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTCTTTTGTTCTGTGCACCATGCAATGAATTGTGGATTCATCTTCCGAGGGC


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 60

CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTCTTTTGTTCTGTGCACCATGCAATGAATTGTGGATTCATCTTCCGAGGGC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 380

CCGACGAGCCCGTCTTGCGTGACAACGAAGCACTGAGGAACAAGTGTCTGGTACCAATGgtgagttttt ... ggcaatgcagAGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTCTTTTGTTCTGTGCACCATGCAATGAATTGTGGATTCATCTTCCGAGGGC




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aataacaaaggatcattgactaaatcatcgccaatgctctgctttggcaatgcagAGTGATATAGAGATGGTTCTACCAATCACGGTTGGAGGTTACACGGACTTCTTTTGTTCTGTGCACCATGCAATGAATTGTGGATTCATCTTCCGAGGGC
                    taaatcat  TA-rich tract