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...cgattatgaggaaagtactgaaaaagcagtgcaatggttgaatgatatagtgactaatgctctgattcatgaacaagagttatgtttttctgtgaaccagGATTTCAAATATGAGGAAAATACCGAAAAGGCAGTACAATGCTTGAACGATATAGTGACGAATGCACTGATTCATGCTGAAGAGTGCCTTCAGTACATGT
species | Zea mays |
transcript | GRMZM2G029396_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCATGTTCTGGCCTCGAGAGATATGGAGTAAATATGCAGATAAACTCGAG GATTTCAAATATGAGGAAAATACCGAAAAGGCAGTACAATGCTTGAACGATEST: gi|60338190|gb|DN205163.1|DN205163
genomic: GCATGTTCTGGCCTCGAGAGATATGGAGTAAATATGCAGATAAACTCGAGgtacacaaaa ... tgtgaaccagGATTTCAAATATGAGGAAAATACCGAAAAGGCAGTACAATGCTTGAACGAT
EST: GAGT-AATATGCAGATAAACTCGAG GATTTCAAATATGAGGAAAATACCGAAAAGGCAGTACAATGCTTGAACGATEST: gi|211142093|gb|FL424854.1|FL424854
genomic: GAGTAAATATGCAGATAAACTCGAGgtacacaaaa ... tgtgaaccagGATTTCAAATATGAGGAAAATACCGAAAAGGCAGTACAATGCTTGAACGAT
EST: GCATGTTCTGGCCTCGAGAGATATGGAGTAAATATGCAGATAAACTCGAG GATTTCAAATATGAGGAAAATACCGAAAAGGCAGTACAATGCTTGAACGATEST: gi|61118553|gb|DN559514.1|DN559514
genomic: GCATGTTCTGGCCTCGAGAGATATGGAGTAAATATGCAGATAAACTCGAGgtacacaaaa ... tgtgaaccagGATTTCAAATATGAGGAAAATACCGAAAAGGCAGTACAATGCTTGAACGAT
EST: AGATATGGAGTAAATATGCAGATAAACTCGAG GATTTCAAATATGAGGAAAATACCGAAAAGGCAGTACAATGCTTGAACGATEST: gi|60399247|gb|DN232061.1|DN232061
genomic: AGATATGGAGTAAATATGCAGATAAACTCGAGgtacacaaaa ... tgtgaaccagGATTTCAAATATGAGGAAAATACCGAAAAGGCAGTACAATGCTTGAACGAT
EST: GCATGTTCTGGCCTCGAGAGATATGGAGTAAATATGCAGATAAACTCGAG GATTTCAAATATGAGGAAAATACCGAAAAGGCAGTACAATGCTTGAACGAT
genomic: GCATGTTCTGGCCTCGAGAGATATGGAGTAAATATGCAGATAAACTCGAGgtacacaaaa ... tgtgaaccagGATTTCAAATATGAGGAAAATACCGAAAAGGCAGTACAATGCTTGAACGAT
tatagtgactaatgctctgattcatgaacaagagttatgtttttctgtgaaccagGATTTCAAATATGAGGAAAATACCGAAAAGGCAGTACAATGCTTGAACGATATAGTGACGAATGCACTGATTCATGCTGAAGAGTGCCTTCAGTACATGT
tgtttttct CT-rich tract
ttatgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgattatgaggaaagtactgaaaaagcagtgcaatggttgaatgatatagtgactaatgctctgattcatgaacaagagttatgtttttctgtgaaccagGATTTCAAATATGAGGAAAATACCGAAAAGGCAGTACAATGCTTGAACGATATAGTGACGAATGCACTGATTCATGCTGAAGAGTGCCTTCAGTACATGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - -gaaaaagc
- - - - - - - - - - - - - - -tgcaatg
- - - - - - - - - - - - - - - - - - -ttgaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacaaga