Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatttactgtccctggactcattctttaatacttacctgatgtctatagcccacctcatcctatcctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTCAGAAGAGGAGAGCATCACTCAATGACTTTGACAGGTTCAAGGTCATGTT

Basic information

species Zea mays
transcript GRMZM2G028883_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G028883_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os04g43540.1 (Oryza sativa), 3'ss of exon 3
gtgatttactgtccctggact-cattctttaatacttacctgatgtctatagcccacctcatcctatcctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTCAGAAGAGGAGAGCATCACTCAATGACTTTGACAGGTTCAAGGTCATGTT
|||||  ||  | | | | ||     ||||  | |     | | ||  |      |    || | ||||||| | |||||||||| | |||||||||||| ||||||||||| ||||| |||||||| ||||||||||||||||| ||||| |||||||||||||||||||| |||||
gtgatgaaccattcttcggctatgaactttttttccactgttaagtgcagttttaattgaatgccatcctgattacagATGTGAAGAACAAGTGGGAGAACAGCTCATGGGGTAAGAAACTGATTGTCCAGAAGAGGAGAGCATCCCTCAACGACTTTGACAGGTTCAAGGTTATGTT

upper sequence: GRMZM2G028883_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA20G35000.1 (Glycine max), 3'ss of exon 3
---------------gtgatttactgtccctg--gactcattctttaatacttacctgatgtctatagcccacctcatcctatcctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTCAGAAGAGGAGAGCATCACTCAATGACTTTGACAGGTTCAAGGTCATGTT
                |   ||| |||   ||   | |   || |||     ||  |||      | |   |  | |     |  |||   ||||||| || | |||||||||||| || |||||||||| ||| || |||||    ||||| || ||||| |||||||| ||||| ||||||||| | |||||
gttcgttgcttttctatcgattattgttattgttaattttatcattaggttataattgaaaatatttgtttatgttacttgttaatga--acagATGTTAAGACCAAGTGGGAGAAGAGTTCATGGGGCAGGAAACTCATTGTCAGAAAGAGAAGGGCATCCCTCAATGATTTTGATAGGTTCAAGATAATGTT

upper sequence: GRMZM2G028883_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA02G00680.1 (Glycine max), 3'ss of exon 3
-gtgatttac-tgtccctggactcattctt-taatacttacctgatgtctata-gcccacctcatcctatcctgactg--cagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTCAGAAGAGGAGAGCATCACTCAATGACTTTGACAGGTTCAAGGTCATGTT
  || |  |  | | |  |||   ||| || |  || |      || ||| |  |  || |   |  | | || | ||  ||||||| || | ||  |||||||| || || |||||||  || |||||||| ||||||||||| ||||| || ||||||||||| ||||||||| | |||||
gttggtacaagttttcacggagaaattgttattttattggaagcatttctttttgttcatcagtttgttttctcattgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGCAGAAGAGGAGGGCATCCCTTAATGACTTTGATAGGTTCAAGATAATGTT

upper sequence: GRMZM2G028883_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA10G00680.1 (Glycine max), 3'ss of exon 3
-gtgatttac-tgtccctggactcattctt-taatacttacctgatgtctata-gcccacctcatcctatcctgactg--cagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTCAGAAGAGGAGAGCATCACTCAATGACTTTGACAGGTTCAAGGTCATGTT
  || |  || | | | || |   ||| || |  || |      || ||| |  |  || |   |  | | ||   ||  ||||||| || | ||  |||||||| || || |||||||  || |||||||| ||||||||||| ||||| |||||||||||||| ||||||||| | |||||
gttggtacacgttttcatgaagaaattgttattttattggaagcatttctttttgttcatcagtttgttttcttgttgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGCAGAAGAGGAGGGCATCCCTCAATGACTTTGATAGGTTCAAGATAATGTT

upper sequence: GRMZM2G028883_T01 (Zea mays), 3'ss of exon 3
lower sequence: AT4G27090.1 (Arabidopsis thaliana), 3'ss of exon 3
gtgatttactgtccctggactcattctttaatacttacctgatgtctatagcccacctcatcctatcctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTCAGAAGAGGAGAGCATCACTCAATGACTTTGACAGGTTCAAGGTCATGTT
|||| |  |||  | |    | | | ||| |   ||      ||| |  | |  | ||       ||     |||||||||||| | |||||||||||| ||||||||||| | |||||| || || |||||  | || ||    || || |||||||| ||||||||| |||||||
gtgagt-gctg--cgtaatgtaaatatttgaattttga--agtgtttcaatcttaactggaaaagtc----ttgcagATGTGAAGAACAAGTGGGAGAAAAGCTCATGGGGTAGGAAGCTTATCGTGCAGAAACGTAGGGCTAACCTTAACGACTTTGATAGGTTCAAGATCATGTT

upper sequence: GRMZM2G028883_T01 (Zea mays), 3'ss of exon 3
lower sequence: AT2G20450.1 (Arabidopsis thaliana), 3'ss of exon 3
------------------gtgatttactgtccctggactcattctttaatacttacctgatgtcta---tagcccacctca--tcctatcctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTCAGAAGAGGAGAGCATCACTCAATGACTTTGACAGGTTCAAGGTCATGTT
                      || | | | | | |  |   |      |  ||   || ||  |    | |  || || |  ||  |   |   |||||||||||| | |||||||||||| || |||||||| | ||| || ||||| |||||||| |||||  | |||||||| ||||||||||||||| |||||||
gtgagtttgttgtagcatacttttgattattcgtaggttttattggcctttttttgttgttggttgggttgggtcatcttagctctaaagttatatgcagATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGCAGAAGAGAAGAGCTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTT

upper sequence: GRMZM2G028883_T01 (Zea mays), 3'ss of exon 3
lower sequence: Vv11s0118g00670.t01 (Vitis vinifera), 3'ss of exon 4
-----gtgatttactgtccctggactcattctttaatacttacctgatgtctatagc-ccacctca--tcctatcctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTCAGAAGAGGAGAGCATCACTCAATGACTTTGACAGGTTCAAGGTCATGTT
     |  || |        |||   |  | ||  ||| ||    |   ||| |  |   | || |  |  | |  |||  |||||||| || | ||||||||||||||| || |||||||  ||| ||||||| ||||||||||| || || || ||||||||||| ||||||||| |||||||
gtaatgacatgtggaaaaaatgggaactcttttccatatttgatagtcatctttttcattatcttaatttttcttttgatggcagATGTTAAGAACAAGTGGGAGAATAGTTCCTGGGGCAGAAAGTTGATTGTCCAGAAGAGGAGGGCCTCTCTTAATGACTTTGATAGGTTCAAGATCATGTT

upper sequence: GRMZM2G028883_T01 (Zea mays), 3'ss of exon 3
lower sequence: Vv05s0049g01310.t01 (Vitis vinifera), 3'ss of exon 4
gtgatttac-tgtccctggactcatt-ctttaatacttacctgatg------tctatagcccacctcatcctatcctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTCAGAAGAGGAGAGCATCACTCAATGACTTTGACAGGTTCAAGGTCATGTT
|| |   || | |      | |  |  || | || | |   ||||       | | | |   | |  |   | |  |||  |||||||| || | |||||||||||||||||| |||||||  ||||||||||| ||||||||||||||||| || ||||||||||| ||||||||| |||||||
gtaaaggacatatgggaaaaatggtaactcttatccatgtttgataatcctttttctcgtttatcctaaattcttttgatggcagATGTTAAGAACAAGTGGGAGAATAGCTCCTGGGGCAGAAAGCTGATTGTGCAGAAGAGGAGAGCATCTCTTAATGACTTTGATAGGTTCAAGATCATGTT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211057735|gb|FL416995.1|FL416995
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|211284367|gb|FL403208.1|FL403208
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|211428637|gb|FL384475.1|FL384475
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|211126538|gb|FL407328.1|FL407328
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|211050747|gb|FL374478.1|FL374478
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTC                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|211221848|gb|FL407464.1|FL407464
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCYG                         ATGTGAAAAGCAAGTGGGATAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|18180815|gb|BM382025.1|BM382025
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|5607945|gb|AI901612.1|AI901612
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|32931539|gb|CF036351.1|CF036351
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|211313239|gb|FL392901.1|FL392901
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|211165947|gb|FL375003.1|FL375003
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|29946618|gb|CB816240.1|CB816240
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|211494460|gb|FL428226.1|FL428226
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|88748517|gb|DY532658.1|DY532658
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|211360514|gb|FL385267.1|FL385267
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|211143214|gb|FL408633.1|FL408633
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|4753346|gb|AI657251.1|AI657251
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|211439750|gb|FL418522.1|FL418522
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|211026841|gb|FL370336.1|FL370336
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|211150585|gb|FL418274.1|FL418274
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|211428796|gb|FL392518.1|FL392518
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|211434204|gb|FL402849.1|FL402849
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTG
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTG
EST: gi|211493633|gb|FL397220.1|FL397220
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|211209573|gb|FL394638.1|FL394638
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|211323108|gb|FL368450.1|FL368450
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|211479851|gb|FL422852.1|FL422852
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|211209617|gb|FL397452.1|FL397452
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|211131969|gb|FL389091.1|FL389091
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|211057286|gb|FL401201.1|FL401201
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAG
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAG
EST: gi|211471273|gb|FL385453.1|FL385453
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|37386068|gb|CF630207.1|CF630207
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|87152982|gb|DY397771.1|DY397771
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|9733117|gb|BE511869.1|BE511869
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|9952872|gb|BE639455.1|BE639455
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|211397824|gb|FL389336.1|FL389336
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGATAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|211429166|gb|FL408885.1|FL408885
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|211369531|gb|FL423738.1|FL423738
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGAT
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGAT
EST: gi|211249692|gb|FL397010.1|FL397010
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|60345598|gb|DN212571.1|DN212571
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|211499585|gb|FL402049.1|FL402049
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|9952871|gb|BE639454.1|BE639454
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|211292336|gb|FL387401.1|FL387401
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|71304846|gb|DR788536.1|DR788536
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|12972467|gb|BG267996.1|BG267996
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|211126324|gb|FL371825.1|FL371825
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|29945582|gb|CB815713.1|CB815713
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|211299168|gb|FL411036.1|FL411036
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|14243478|gb|BG841143.2|BG841143
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAAAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|211314987|gb|FL374729.1|FL374729
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|211199119|gb|FL383383.1|FL383383
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGACGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|32911085|gb|CF015897.1|CF015897
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|211212939|gb|FL424469.1|FL424469
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|211371321|gb|FL393832.1|FL393832
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|211364207|gb|FL423702.1|FL423702
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|211516414|gb|FL409528.1|FL409528
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|15215168|gb|BI431186.1|BI431186
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|211194737|gb|FL410101.1|FL410101
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|8102651|gb|AW927299.1|AW927299
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|211199115|gb|FL383379.1|FL383379
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|211363431|gb|FL397066.1|FL397066
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|32164912|gb|CD670230.1|CD670230
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|60345487|gb|DN212460.1|DN212460
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|211341885|gb|FL422753.1|FL422753
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|211524495|gb|FL408985.1|FL408985
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|7844182|gb|AW787404.1|AW787404
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|211485156|gb|FL401976.1|FL401976
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|211217095|gb|FL383478.1|FL383478
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGATAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|211330632|gb|FL423266.1|FL423266
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|19436589|gb|BM952999.1|BM952999
EST:     TAAACGTGTCCCATAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|211325363|gb|FL370100.1|FL370100
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|211219621|gb|FL402180.1|FL402180
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|60339771|gb|DN206744.1|DN206744
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|20300679|gb|BQ163622.1|BQ163622
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|67011948|gb|CO440697.1|CO440697
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|211153455|gb|FL403820.1|FL403820
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|4753345|gb|AI657250.1|AI657250
EST:     TAAACGTGTCCCANAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|211257174|gb|FL417863.1|FL417863
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|166602815|gb|EG269957.1|EG269957
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGG
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGG
EST: gi|211137666|gb|FL400355.1|FL400355
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|211162916|gb|FL392798.1|FL392798
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|211163059|gb|FL403919.1|FL403919
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|211123282|gb|FL408216.1|FL408216
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|31997790|gb|CD661772.1|CD661772
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|31997792|gb|CD661773.1|CD661773
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|211518868|gb|FL413409.1|FL413409
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|211478910|gb|FL382320.1|FL382320
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|211060388|gb|FL405184.1|FL405184
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|32164911|gb|CD670229.1|CD670229
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|22490936|gb|BU050859.1|BU050859
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
EST: gi|83278782|gb|DV942790.1|DV942790
EST:     TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTG                         ATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC
genomic: TAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 803

TGCCAAATGAACTTCAAGCGGCTTTCCCTGACTGACATCAAGATTGACATTAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTCAGAAGAGGAGAGCATCACTCAATGACTTTGACAGGTTCAAGGTCATGTT


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 612

TGCCAAATGAACTTCAAGCGGCTTTCCCTGACTGACATCAAGATTGACATTAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTCAGAAGAGGAGAGCATCACTCAATGACTTTGACAGGTTCAAGGTCATGTT


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 460

TGCCAAATGAACTTCAAGCGGCTTTCCCTGACTGACATCAAGATTGACATTAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTCAGAAGAGGAGAGCATCACTCAATGACTTTGACAGGTTCAAGGTCATGTT


Block sizes: 47 (upstream exon), 47 (downstream exon)
Score: 265

TGCCAAATGAACTTCAAGCGGCTTTCCCTGACTGACATCAAGATTGACATTAAACGTGTCCCAAAGAAGACTACACTGATCAAGGCAATGGAGGAAGCTGgtgatttact ... ctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTCAGAAGAGGAGAGCATCACTCAATGACTTTGACAGGTTCAAGGTCATGTT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attctttaatacttacctgatgtctatagcccacctcatcctatcctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTCAGAAGAGGAGAGCATCACTCAATGACTTTGACAGGTTCAAGGTCATGTT
                                 cctcatcctatcct  CT-rich tract
     ttaatactta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgatttactgtccctggactcattctttaatacttacctgatgtctatagcccacctcatcctatcctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTCAGAAGAGGAGAGCATCACTCAATGACTTTGACAGGTTCAAGGTCATGTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA