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...ttgcacataaggtctgattgcatattagttgttgccatttctagtataactaagtatctagaccaattagtctatatatgttcctatatgttttctttagGAACGTGCTGCTGGTGCGCTTGCAAACCTGGCTGCCGACGACAAGTGTAGCTTGGAAGTTGCAAAGGCTGGTGGTGTCCATGCTTTGGTTACACTTGCTC
species | Zea mays |
transcript | GRMZM2G028796_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCCTGGTAGATCTAATATTTCGTTGGCCTGCTGGAACCGATGGAGTTCTT TEST: gi|211104624|gb|FL034749.1|FL034749
genomic: CCCTGGTAGATCTAATATTTCGTTGGCCTGCTGGAACCGATGGAGTTCTTgtatgaagcc ... ttttctttag-
EST: CCCTGGTAGATCTAATATTTCGTTGGCCTGCTGGAACCGATGGAGTTCTT TEST: gi|211104625|gb|FL034750.1|FL034750
genomic: CCCTGGTAGATCTAATATTTCGTTGGCCTGCTGGAACCGATGGAGTTCTTgtatgaagcc ... ttttctttag-
EST: CCCTGGTAGATCTAATATTTCGTTGGCCTGCTGGAACCGATGGAGTTCTT GAACGTGCTGCTGGTGCGCTTGCAAACCTGGCTGCCGACGACAAGTGTAGCEST: gi|211104626|gb|FL034751.1|FL034751
genomic: CCCTGGTAGATCTAATATTTCGTTGGCCTGCTGGAACCGATGGAGTTCTTgtatgaagcc ... ttttctttagGAACGTGCTGCTGGTGCGCTTGCAAACCTGGCTGCCGACGACAAGTGTAGC
EST: CCCTGGTAGATCTAATATTTCGTTGGCCTGCTGGAACCGATGGAGTTCTT GAACGTGCTGCTGGTGCGCTTGCAAACCTGGCTGCCGACGACAAGTGTAGCEST: gi|211104621|gb|FL034746.1|FL034746
genomic: CCCTGGTAGATCTAATATTTCGTTGGCCTGCTGGAACCGATGGAGTTCTTgtatgaagcc ... ttttctttagGAACGTGCTGCTGGTGCGCTTGCAAACCTGGCTGCCGACGACAAGTGTAGC
EST: NCCTGGTAGATCTAATATTTCGGTGGCCTGCTGGAACCGATGGAGTTCTT GAACGTGCTGCTGGTGCGCTTGCAAACCEST: gi|211104623|gb|FL034748.1|FL034748
genomic: CCCTGGTAGATCTAATATTTCGTTGGCCTGCTGGAACCGATGGAGTTCTTgtatgaagcc ... ttttctttagGAACGTGCTGCTGGTGCGCTTGCAAACC
EST: CCCTGGTAGATCTAATATTTCGTTGGCCTGCTGGAACCGATGGAGTTCTT GAACGTGCTGCTGGTGCGCTTGCAAACCTGGCTGCCGACGACAAGTGTAGCEST: gi|211102157|gb|FL034743.1|FL034743
genomic: CCCTGGTAGATCTAATATTTCGTTGGCCTGCTGGAACCGATGGAGTTCTTgtatgaagcc ... ttttctttagGAACGTGCTGCTGGTGCGCTTGCAAACCTGGCTGCCGACGACAAGTGTAGC
EST: CCCTGGTAGATCTAATATTTCGTTGGCCTGCTGGAACCGATGGAGTTCTT GAACGTGCTGCTGGTGCGCTTGCAAACCTGGCTGCCGACGACAAGTGTAGCEST: gi|211104620|gb|FL034745.1|FL034745
genomic: CCCTGGTAGATCTAATATTTCGTTGGCCTGCTGGAACCGATGGAGTTCTTgtatgaagcc ... ttttctttagGAACGTGCTGCTGGTGCGCTTGCAAACCTGGCTGCCGACGACAAGTGTAGC
EST: CCCTGGTAGATCTAATATTTCGTTGGCCTGCTGGAACCGATGGAGTTCTT GAACGTGCTGCTGGTGCGCTTGCAAACCTGGCTGCCGACGACAAGTGTAGC
genomic: CCCTGGTAGATCTAATATTTCGTTGGCCTGCTGGAACCGATGGAGTTCTTgtatgaagcc ... ttttctttagGAACGTGCTGCTGGTGCGCTTGCAAACCTGGCTGCCGACGACAAGTGTAGC
ataactaagtatctagaccaattagtctatatatgttcctatatgttttctttagGAACGTGCTGCTGGTGCGCTTGCAAACCTGGCTGCCGACGACAAGTGTAGCTTGGAAGTTGCAAAGGCTGGTGGTGTCCATGCTTTGGTTACACTTGCTC
gtataac putative branch site (score: 110)
tgttttcttt putative PPT
aattagtctatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgcacataaggtctgattgcatattagttgttgccatttctagtataactaagtatctagaccaattagtctatatatgttcctatatgttttctttagGAACGTGCTGCTGGTGCGCTTGCAAACCTGGCTGCCGACGACAAGTGTAGCTTGGAAGTTGCAAAGGCTGGTGGTGTCCATGCTTTGGTTACACTTGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- gcacata
- - - - - - - tgattgc
- - - - - - - - - - - - - - -tgttgcc