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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatgcatgcatggaagctgcttaattatattagtttgaactactcagaataatggagcttgatcttacttaataaatgtttgcttatcgtacgtagGTCATCCAAGGATCATTCACAGGGATATCAAGTCGTCAAACATCTTGCTTGATGACCAGTTTGAGGCTCAG

Basic information

species Zea mays
transcript GRMZM2G028731_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G028731_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os06g29340.1 (Oryza sativa), 3'ss of exon 2
gtaagatgcatgcatggaagctgcttaattatattagtttgaactactcagaataatggagcttgatcttacttaataaatgtttgcttatcgtacgtagGTCATCCAAGGATCATTCACAGGGATATCAAGTCGTCAAACATCTTGCTTGATGACCAGTTTGAGGCTCAG
| | ||| ||     |  |  |   |  ||   |  ||  ||| | || |   ||||     |   |  |   |  |  |  |||| ||        ||||||||||||| ||||| |||||||| || ||||| ||||||||| | |||||||| || ||||| ||||||
gaaggattcagttgggttatgtcagtgttttgttctgtcggaaatcctgatgttaataattatatttgctttctcttggaactttgttttgttactatagGTCATCCAAGAATCATCCACAGGGACATAAAGTCATCAAACATCCTTCTTGATGAGCACTTTGAAGCTCAG

upper sequence: GRMZM2G028731_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA01G23180.1 (Glycine max), 3'ss of exon 3
gtaagatgcatgcatggaagctgctt-aattatattagtttgaactactcagaataatggagcttgatcttacttaataaatgtttgcttatcgtacgta-----gGTCATCCAAGGATCATTCACAGGGATATCAAGTCGTCAAACATCTTGCTTGATGACCAGTTTGAGGCTCAG
     ||  ||  ||| | ||| ||| ||  || ||       ||| |  ||| |  || |   | |  ||| |    |  |  |||  | |  | |  |     ||  | || |||||||||||||||||||||||||| ||||||||  |  | |||  | | | ||| ||  ||
----catcaattgatgta-gctacttgaaccatcttgtagaatactgcataga-tgttgtattattaatttattattgatgtaattgtatgttatgcacatttcagGCAACCCTAGGATCATTCACAGGGATATCAAGTCATCAAACATTCTTTTAGATTTCAATTATGAAGCCAAG

upper sequence: GRMZM2G028731_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA02G14310.1 (Glycine max), 3'ss of exon 3
gtaagatgcatgcatggaagctgcttaattatattagtttga-actactcagaataatggagcttgatcttacttaataaatgtttgcttatcgtacgt-------agGTCATCCAAGGATCATTCACAGGGATATCAAGTCGTCAAACATCTTGCTTGATGACCAGTTTGAGGCTCAG
     ||  ||  ||| | | | ||| | |    ||||  || | | |  ||||   || |   | |  |||||   |  |||||   ||||  || |        |||  | || |||||||||||||||||||||||||| ||||||||  |  | |||  | | ||||| ||  ||
----catcaattgatgcagg-tacttgactcatctagtaggataatgcatagaa-gttgtattattaatttact--gttgatgttattttatgttatgcgcatttcagGCAACCCTAGGATCATTCACAGGGATATCAAGTCATCAAACATTCTCTTAGATTTCAATTTTGAAGCCAAG

upper sequence: GRMZM2G028731_T01 (Zea mays), 3'ss of exon 3
lower sequence: AT1G68690.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaagatgcatgcatggaagctgcttaattatattagtttgaactactcagaataatggagcttgatcttacttaataaatgtttgcttatcgtacgtagGTCATCCAAGGATCATTCACAGGGATATCAAGTCGTCAAACATCTTGCTTGATGACCAGTTTGAGGCTCAG
           | |  |  | |||||||  |   |||||| | ||  |||    ||||     |  |||       ||||   |||  |||  |    |||||||||  | |||||||||||||| ||||||||||| |||||  |  | || ||| | ||||| |||| |
-----------gta-agttgttgcttaacca--ctagtttaaccttttcaatcaaatg----ctagtctc------taaactcttgtctattat---cagGTCATCCGCGTATCATTCACAGGGACATCAAGTCGTCTAACATTCTTTTAGAGGACAACTTTGATGCTCGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actcagaataatggagcttgatcttacttaataaatgtttgcttatcgtacgtagGTCATCCAAGGATCATTCACAGGGATATCAAGTCGTCAAACATCTTGCTTGATGACCAGTTTGAGGCTCAG
                       ttacttaataaatgtt  TA-rich tract