1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aacaataattttgtttaatctctatacctgctagaatcccattttttggtagataatttttatcagctaatttgctttagtgctaaataatttttgtcagCCATTGGAGAGAATCACAGCCTCTACAATGAAGAAGAAAATTTTTGAGGGGGCCTTTGTACTCTCTTGTGAACAAGATCACAGTGTTTGCATGCCATTAA
species | Zea mays |
transcript | GRMZM2G028685_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGCCTAGCAAGGAGCTTCTGAAGAGTTTAGTAGTTGCAGCTCACGGTCAG CCATTGGAGAGAATCACAGCCTCTACAATGAAGAAGAAAATTTTTGAGGGGEST: gi|60339789|gb|DN206762.1|DN206762
genomic: AGCCTAGCAAGGAGCTTCTGAAGAGTTTAGTAGTTGCAGCTCACGGTCAGgtgtgcaatt ... tttttgtcagCCATTGGAGAGAATCACAGCCTCTACAATGAAGAAGAAAATTTTTGAGGGG
EST: AGCCTGGCAAGGAGCTTCTGAAGAGTTTAGTAGTTGCAGCTCACGGTCAG CCATTGGAGAGAATCACAGCCTCTACAATGAAGAAGAAAATTTTTGAGGGGEST: gi|83278682|gb|DV942690.1|DV942690
genomic: AGCCTAGCAAGGAGCTTCTGAAGAGTTTAGTAGTTGCAGCTCACGGTCAGgtgtgcaatt ... tttttgtcagCCATTGGAGAGAATCACAGCCTCTACAATGAAGAAGAAAATTTTTGAGGGG
EST: AGCCTAGCAAGGAGCTTCTGAAGAGTTTAGTAGTTGCAGCTCACGGTCAG CCATTGGAGAGAATCACAGCCTCTACAATGAAGAAGAAAATTTTTGAGGGGEST: gi|60343103|gb|DN210076.1|DN210076
genomic: AGCCTAGCAAGGAGCTTCTGAAGAGTTTAGTAGTTGCAGCTCACGGTCAGgtgtgcaatt ... tttttgtcagCCATTGGAGAGAATCACAGCCTCTACAATGAAGAAGAAAATTTTTGAGGGG
EST: AGCCTAGCAAGGAGCTTCTGAAGAGTTTAGTAGTTGCAGCTCACGGTCAG CCATTGGAGAGAATCACAGCCTCTACAATGAAGAAGAAAATTTTTGAGGGGEST: gi|60350264|gb|DN217237.1|DN217237
genomic: AGCCTAGCAAGGAGCTTCTGAAGAGTTTAGTAGTTGCAGCTCACGGTCAGgtgtgcaatt ... tttttgtcagCCATTGGAGAGAATCACAGCCTCTACAATGAAGAAGAAAATTTTTGAGGGG
EST: AGCCTAGCAAGGAGCTTCTGAAGAGTTTAGTAGTTGCAGCTCACGGTCAG CCATTGGAGAGAATCACAGCCTCTACAATGAAGAAGAAAATTTTTGAGGGGEST: gi|101383529|gb|EB813820.1|EB813820
genomic: AGCCTAGCAAGGAGCTTCTGAAGAGTTTAGTAGTTGCAGCTCACGGTCAGgtgtgcaatt ... tttttgtcagCCATTGGAGAGAATCACAGCCTCTACAATGAAGAAGAAAATTTTTGAGGGG
EST: AGCCTAGCAAGGAGCTTCTGAAGAGTTTAGTAGTTGCAGCTCACGGTCAG CCATTGGAGAGAATCACAGCCTCTACAATGAAGAAGAAAATTTTTGAGGGG
genomic: AGCCTAGCAAGGAGCTTCTGAAGAGTTTAGTAGTTGCAGCTCACGGTCAGgtgtgcaatt ... tttttgtcagCCATTGGAGAGAATCACAGCCTCTACAATGAAGAAGAAAATTTTTGAGGGG
ttggtagataatttttatcagctaatttgctttagtgctaaataatttttgtcagCCATTGGAGAGAATCACAGCCTCTACAATGAAGAAGAAAATTTTTGAGGGGGCCTTTGTACTCTCTTGTGAACAAGATCACAGTGTTTGCATGCCATTAA
tgctaaa putative branch site (score: 1)
tttttgtc putative PPT
ataatttttatcagct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacaataattttgtttaatctctatacctgctagaatcccattttttggtagataatttttatcagctaatttgctttagtgctaaataatttttgtcagCCATTGGAGAGAATCACAGCCTCTACAATGAAGAAGAAAATTTTTGAGGGGGCCTTTGTACTCTCTTGTGAACAAGATCACAGTGTTTGCATGCCATTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
aacaata
- - - - ttttgtt
- - - - - - - - - - - - - cctgcta
- - - - - - - - - - - - - - - - - - - - - -ttttggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tagtgct