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gtacacaaagtttggcttacattctcatgacggcttgtaagtgttttctgtctcaaactgtatcttgctgaccattctccttacttgcagCTTCGCAGATCTGCAAAATCCTCAGATGAACTTTGATGGAAAGGCATGTGCTGCTGTTGGTCAAAGTGTCCTGATGGCGATCTATGACACATTATTTAGC
species | Zea mays |
transcript | GRMZM2G028535_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTTGGTGTTGGGAGGCAGAGGCTCCAATACCGTAAACTTATCCATAGCAG CTTCGCAGATCTGCAAAATCCTCAGATGAACTTTGATGGAAAGGCATGTGCEST: gi|88755722|gb|DY539863.1|DY539863
genomic: GTTGGTGTTGGGAGGCAGAGGCTCCAATACCGTAAACTTATCCATAGCAGgtacacaaag ... ttacttgcagCTTCGCAGATCTGCAAAATCCTCAGATGAACTTTGATGGAAAGGCATGTGC
EST: GTTGGTGTTGGGAGGCAGAGGCTCCAATACCGTAAACTTATCCATAGCAG CTTCGCAGATCTGCAAAATCCTCAGATGAACTTTGATGGAAAGGCATGTGCEST: gi|6021065|gb|AW065993.1|AW065993
genomic: GTTGGTGTTGGGAGGCAGAGGCTCCAATACCGTAAACTTATCCATAGCAGgtacacaaag ... ttacttgcagCTTCGCAGATCTGCAAAATCCTCAGATGAACTTTGATGGAAAGGCATGTGC
EST: GGTGGGGGTGGGAGGCAGAGGCTCCAATACCGTAAACTTATCCATGGGAG CTTCGCAGATCTGCAAAATCCTCAGATGAACTTTGATGGAAAGGCATGTGCEST: gi|149066720|gb|EE286861.2|EE286861
genomic: GTTGGTGTTGGGAGGCAGAGGCTCCAATACCGTAAACTTATCCATAGCAGgtacacaaag ... ttacttgcagCTTCGCAGATCTGCAAAATCCTCAGATGAACTTTGATGGAAAGGCATGTGC
EST: GTTGGTGTTGGGAGGCAGAGGCTCCAATACCGTAAACTTATCCATAGCAG CTTCGCAGATCTGCAAAATCCTCAGATGAACTTTGATGGAAAGGCATGTGCEST: gi|74245732|gb|DT653646.1|DT653646
genomic: GTTGGTGTTGGGAGGCAGAGGCTCCAATACCGTAAACTTATCCATAGCAGgtacacaaag ... ttacttgcagCTTCGCAGATCTGCAAAATCCTCAGATGAACTTTGATGGAAAGGCATGTGC
EST: GTTGGTGTTGGGAGGCAGAGGCTCCAATACCGTAAACTTATCCATAGCAG CTTCGCAGATCTGCAAAATCCTCAGATGAACTTTGATGGAAAGGCATGTGCEST: gi|101391687|gb|EB817780.1|EB817780
genomic: GTTGGTGTTGGGAGGCAGAGGCTCCAATACCGTAAACTTATCCATAGCAGgtacacaaag ... ttacttgcagCTTCGCAGATCTGCAAAATCCTCAGATGAACTTTGATGGAAAGGCATGTGC
EST: GTTGGTGTTGGGAGGCAGAGGCTCCAATACCGTAAACTTATCCATAGCAG CTTCGCAGATCTGCAAAATCCTCAGATGAACTTTGATGGAAAGGCATGTGC
genomic: GTTGGTGTTGGGAGGCAGAGGCTCCAATACCGTAAACTTATCCATAGCAGgtacacaaag ... ttacttgcagCTTCGCAGATCTGCAAAATCCTCAGATGAACTTTGATGGAAAGGCATGTGC
tgtaagtgttttctgtctcaaactgtatcttgctgaccattctccttacttgcagCTTCGCAGATCTGCAAAATCCTCAGATGAACTTTGATGGAAAGGCATGTGCTGCTGTTGGTCAAAGTGTCCTGATGGCGATCTATGACACATTATTTAGC
tccttac putative branch site (score: 288)
ccattctccttactt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacacaaagtttggcttacattctcatgacggcttgtaagtgttttctgtctcaaactgtatcttgctgaccattctccttacttgcagCTTCGCAGATCTGCAAAATCCTCAGATGAACTTTGATGGAAAGGCATGTGCTGCTGTTGGTCAAAGTGTCCTGATGGCGATCTATGACACATTATTTAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT