1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tcaaattgcttttatattttcctgcttatatgacagcaaggaacctgaaaaggctactgctcgtcaaaatttacattctgacaaaatgtgcccaatgcagAATTTATGGAGTGCATGACGAATCCAAGGACAAAGCTTTTGAGTTGGAGTTGAGCTGGATCTGTGATGAATCGAACCGCCAGCATCAGAAG
species | Zea mays |
transcript | GRMZM2G028346_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAACTTTCGGAGCTTACCTGCCGAGAAGGCATTGTTGAAGTTGCAAAGAT AATTTATGGAGTGCATGACGAATCCAAGGACAAAGCTTTTGAGTTGGAGTTEST: gi|211317862|gb|FK969336.1|FK969336
genomic: AAACTTTCGGAGCTTACCTGCCGAGAAGGCATTGTTGAAGTTGCAAAGATgtatgcctaa ... cccaatgcagAATTTATGGAGTGCATGACGAATCCAAGGACAAAGCTTTTGAGTTGGAGTT
EST: AAACTTTCGGAGCTTACCTGCCGAGAAGGCATTGTTGAAGTTGCAAAGAT AATTTATGGAGTGCATGACGAATCCAAGGACAAAGCTTTTGAGTTGGAGTTEST: gi|211317857|gb|FK969331.1|FK969331
genomic: AAACTTTCGGAGCTTACCTGCCGAGAAGGCATTGTTGAAGTTGCAAAGATgtatgcctaa ... cccaatgcagAATTTATGGAGTGCATGACGAATCCAAGGACAAAGCTTTTGAGTTGGAGTT
EST: AAACTTTCGGAGCTTACCTGCCGAGAAGGCATTGTTGAAGTTGCAAAGAT AATTTATGGAGTGCATGACGAATCCAAGGACAAAGCTTTTGAGTTGGAGTTEST: gi|16919551|gb|BM074245.1|BM074245
genomic: AAACTTTCGGAGCTTACCTGCCGAGAAGGCATTGTTGAAGTTGCAAAGATgtatgcctaa ... cccaatgcagAATTTATGGAGTGCATGACGAATCCAAGGACAAAGCTTTTGAGTTGGAGTT
EST: GAAGGCATTGTTGAAGTTGCAGAGAT AATTTATGGAGTGCATGACGAATCCAAGGACAAAGCTTTTGAGTTGGAGTTEST: gi|211317861|gb|FK969335.1|FK969335
genomic: GAAGGCATTGTTGAAGTTGCAAAGATgtatgcctaa ... cccaatgcagAATTTATGGAGTGCATGACGAATCCAAGGACAAAGCTTTTGAGTTGGAGTT
EST: AAACTTTCGGAGCTTACCTGCCGAGAAGGCATTGTTGAAGTTGCAAAGAT NATTTATGGAGTGCATGACGAATCCAAGGACAAAGCTTTTGAGTTGGAGTTEST: gi|211404206|gb|FL443972.1|FL443972
genomic: AAACTTTCGGAGCTTACCTGCCGAGAAGGCATTGTTGAAGTTGCAAAGATgtatgcctaa ... cccaatgcagAATTTATGGAGTGCATGACGAATCCAAGGACAAAGCTTTTGAGTTGGAGTT
EST: AAACTTTCGGAGCTTACCTGCCGAGAAGGCATTGTTGAAGTTGCAAAGAT AATTTATGGAGTGCATGACGAATCCAAGGACAAAGCTTTTGAGTTGGAGTTEST: gi|211317859|gb|FK969333.1|FK969333
genomic: AAACTTTCGGAGCTTACCTGCCGAGAAGGCATTGTTGAAGTTGCAAAGATgtatgcctaa ... cccaatgcagAATTTATGGAGTGCATGACGAATCCAAGGACAAAGCTTTTGAGTTGGAGTT
EST: AAACTTTCGGAGCTTACCTGCCGAGAAGGCATTGTTGAAGTTGCAAAGAT AATTTATGGAGTGCATGACGAATCCAAGGACAAAGCTTTTGAGTTGGAGTTEST: gi|211079760|gb|FK950720.1|FK950720
genomic: AAACTTTCGGAGCTTACCTGCCGAGAAGGCATTGTTGAAGTTGCAAAGATgtatgcctaa ... cccaatgcagAATTTATGGAGTGCATGACGAATCCAAGGACAAAGCTTTTGAGTTGGAGTT
EST: AAACTTTCGGAGCTTACCTGCCGAGAAGGCATTGTTGAAGTTGCAAAGAT AATTTATGGAGTGCATGACGAATCCAAGGACAAAGCTTTTGAGTTGGAGTTEST: gi|32933640|gb|CF038452.1|CF038452
genomic: AAACTTTCGGAGCTTACCTGCCGAGAAGGCATTGTTGAAGTTGCAAAGATgtatgcctaa ... cccaatgcagAATTTATGGAGTGCATGACGAATCCAAGGACAAAGCTTTTGAGTTGGAGTT
EST: AAACTTTCGGAGCTTACCTGCAGAGAAGGCATTGTTGAAGTTGCAAAGAT AATTTATGGAGTGCATGACGAATCCAAGGACAAAGCTTTTGAGTTGGAGTTEST: gi|211169213|gb|FL479845.1|FL479845
genomic: AAACTTTCGGAGCTTACCTGCCGAGAAGGCATTGTTGAAGTTGCAAAGATgtatgcctaa ... cccaatgcagAATTTATGGAGTGCATGACGAATCCAAGGACAAAGCTTTTGAGTTGGAGTT
EST: AAACTTTCGGAGCTTACCTGCCGAGAAGGCATTGTTGAAGTTGCAAAGAT AATTTATGGAGTGCATGACGAATCCAAGGACAAAGCTTTTGAGTTGGAGTTEST: gi|211317856|gb|FK969330.1|FK969330
genomic: AAACTTTCGGAGCTTACCTGCCGAGAAGGCATTGTTGAAGTTGCAAAGATgtatgcctaa ... cccaatgcagAATTTATGGAGTGCATGACGAATCCAAGGACAAAGCTTTTGAGTTGGAGTT
EST: AAACTTTCGGAGCTTACCTGCCGAGAAGGCATTGTTGAAGTTGCAAAGAT AATTTATGGAGTGCATGACGAATCCAAGGACAAAGCTTTTGAGTTGGAGTTEST: gi|211317864|gb|FK969338.1|FK969338
genomic: AAACTTTCGGAGCTTACCTGCCGAGAAGGCATTGTTGAAGTTGCAAAGATgtatgcctaa ... cccaatgcagAATTTATGGAGTGCATGACGAATCCAAGGACAAAGCTTTTGAGTTGGAGTT
EST: AAACTTTCGGAGCTTACCTGCCGAGAAGGCATTGTTGAAGTTGCAAAGAT AATTTATGGAGTGCATGACGAATCCAAGGACAAAGCTTTTGAGTTGGAGTTEST: gi|211317854|gb|FK969328.1|FK969328
genomic: AAACTTTCGGAGCTTACCTGCCGAGAAGGCATTGTTGAAGTTGCAAAGATgtatgcctaa ... cccaatgcagAATTTATGGAGTGCATGACGAATCCAAGGACAAAGCTTTTGAGTTGGAGTT
EST: AAACTTTCGGAGCTTACCTGCCGAGAAGGCATTGTTGAAGTTGCAAAGAT AATTTATGGAGTGCATGACGAATCCAAGGACAAAGCTTTTGAGTTGGAGTTEST: gi|211317865|gb|FK969339.1|FK969339
genomic: AAACTTTCGGAGCTTACCTGCCGAGAAGGCATTGTTGAAGTTGCAAAGATgtatgcctaa ... cccaatgcagAATTTATGGAGTGCATGACGAATCCAAGGACAAAGCTTTTGAGTTGGAGTT
EST: AAACTTTCGGAGCTTACCTGCCGAGAAGGCATTGTTGAAGTTGCAAAGAT AATTTATGGAGTGCATGACGAATCCAAGGACAAAGCTTTTGAGTTGGAGTTEST: gi|12969059|gb|BG266004.1|BG266004
genomic: AAACTTTCGGAGCTTACCTGCCGAGAAGGCATTGTTGAAGTTGCAAAGATgtatgcctaa ... cccaatgcagAATTTATGGAGTGCATGACGAATCCAAGGACAAAGCTTTTGAGTTGGAGTT
EST: AAACTTTCGGAGCTTACCTGCAGAGAAGGCATTGTTGAAGTTGCAAAGAT AATTTATGGAGTGCATGACGAATCCAAGGACAAAGCTTTTGAGTTGGAGTTEST: gi|211317860|gb|FK969334.1|FK969334
genomic: AAACTTTCGGAGCTTACCTGCCGAGAAGGCATTGTTGAAGTTGCAAAGATgtatgcctaa ... cccaatgcagAATTTATGGAGTGCATGACGAATCCAAGGACAAAGCTTTTGAGTTGGAGTT
EST: AAACTTTCGGAGCTTACCTGCCGAGAAGGCATTGTTGAAGTTGCAAAGAT AATTTATGGAGTGCATGACGAATCCAAGGACAAAGCTTTTGAGTTGGAGTTEST: gi|211317855|gb|FK969329.1|FK969329
genomic: AAACTTTCGGAGCTTACCTGCCGAGAAGGCATTGTTGAAGTTGCAAAGATgtatgcctaa ... cccaatgcagAATTTATGGAGTGCATGACGAATCCAAGGACAAAGCTTTTGAGTTGGAGTT
EST: AAACTTTCGGAGCTTACCTGCCGAGAAGGCATTGTTGAAGTTGCAAAGAT AATTTATGGAGTGCATGACGAATCCAAGGACAAAGCTTTTGAGTTGGAGTTEST: gi|113814414|gb|DW931999.1|DW931999
genomic: AAACTTTCGGAGCTTACCTGCCGAGAAGGCATTGTTGAAGTTGCAAAGATgtatgcctaa ... cccaatgcagAATTTATGGAGTGCATGACGAATCCAAGGACAAAGCTTTTGAGTTGGAGTT
EST: GTTGAAGTTGCAAAGAT AATTTATGGAGTGCATGACGAATCCAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: GTTGAAGTTGCAAAGATgtatgcctaa ... cccaatgcagAATTTATGGAGTGCATGACGAATCCAAGGACAAAGCTTTTGAGTTGGAGTT
tgaaaaggctactgctcgtcaaaatttacattctgacaaaatgtgcccaatgcagAATTTATGGAGTGCATGACGAATCCAAGGACAAAGCTTTTGAGTTGGAGTTGAGCTGGATCTGTGATGAATCGAACCGCCAGCATCAGAAG
ttctgac putative branch site (score: 177)
tcaaaatttacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaaattgcttttatattttcctgcttatatgacagcaaggaacctgaaaaggctactgctcgtcaaaatttacattctgacaaaatgtgcccaatgcagAATTTATGGAGTGCATGACGAATCCAAGGACAAAGCTTTTGAGTTGGAGTTGAGCTGGATCTGTGATGAATCGAACCGCCAGCATCAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - tgctttt
- - - - - - - - - - cctgctt
- - - - - - - - - - - - - - - - - - - - - acctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - gctactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cattctg