1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tggaaacaggacatcacacttcgcccatactgaaatgcaaatagaagttgttgtactctagtttacaactcttagaatggtctcttgtgattcttttcagGGAAAACCATATCTAGAGGATGGCCGTCAGTGGACAGCACGAGACATAGGTCTCAGTCACAGAACTTGTGCGTGGATGACTCATGGATTTATGAGTGTTA
species | Zea mays |
transcript | GRMZM2G028307_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TAAGTGTGCAGGCTGTTAATGCTGACACGCCTATCTTGGACATAAAGACG GGAAAACCATATCTAGAGGATGGCCGTCAGTGGACAGCACGAGACATAGGTEST: gi|71436528|gb|DR817578.1|DR817578
genomic: TAAGTGTGCAGGCTGTTAATGCTGACACGCCTATCTTGGACATAAAGACGgtactattct ... ttcttttcagGGAAAACCATATCTAGAGGATGGCCGTCAGTGGACAGCACGAGACATAGGT
EST: TAAGTGTGCAGGCTGTTAATGCTGACACGCCTATCTTGGACATAAAGACG GGAAAACCATATCTAGAGGATGGCCGTCGGTGGACAGCACGAGACATAGGTEST: gi|50328271|gb|CO523397.1|CO523397
genomic: TAAGTGTGCAGGCTGTTAATGCTGACACGCCTATCTTGGACATAAAGACGgtactattct ... ttcttttcagGGAAAACCATATCTAGAGGATGGCCGTCAGTGGACAGCACGAGACATAGGT
EST: TAAGTGTGCAGGCTGTTAATGCTGACACGCCTATCTTGGACATAAAGACG GGAAAACCATATCTAGAGGATGGCCGTCAGTGGACAGCACGAGACATAGGTEST: gi|71444847|gb|DR825897.1|DR825897
genomic: TAAGTGTGCAGGCTGTTAATGCTGACACGCCTATCTTGGACATAAAGACGgtactattct ... ttcttttcagGGAAAACCATATCTAGAGGATGGCCGTCAGTGGACAGCACGAGACATAGGT
EST: TAAGTGTGCAGGCTGTTAATGCTGACACGCCTATCTTGGACATAAAGACG GGAAAACCATATCTAGAGGATGGCCGTCAGTGGACAGCACGAGACATAGGT
genomic: TAAGTGTGCAGGCTGTTAATGCTGACACGCCTATCTTGGACATAAAGACGgtactattct ... ttcttttcagGGAAAACCATATCTAGAGGATGGCCGTCAGTGGACAGCACGAGACATAGGT
agttgttgtactctagtttacaactcttagaatggtctcttgtgattcttttcagGGAAAACCATATCTAGAGGATGGCCGTCAGTGGACAGCACGAGACATAGGTCTCAGTCACAGAACTTGTGCGTGGATGACTCATGGATTTATGAGTGTTA
ttcttttc CT-rich tract
attctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggaaacaggacatcacacttcgcccatactgaaatgcaaatagaagttgttgtactctagtttacaactcttagaatggtctcttgtgattcttttcagGGAAAACCATATCTAGAGGATGGCCGTCAGTGGACAGCACGAGACATAGGTCTCAGTCACAGAACTTGTGCGTGGATGACTCATGGATTTATGAGTGTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA