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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgatactatctatcatctgatgctgtctgttttggtcgaaccgtagcttgcatgctcaccatggatcgccatctgttccagGAAAAGCAGCGGCTTCTCGCGCGGCGCTTCGATCTACCGGGGAGTCACCAG

Basic information

species Zea mays
transcript GRMZM2G028151_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G028151_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os03g56050.1 (Oryza sativa), 3'ss of exon 5
--gtactg-ata-ctatctatcatctgatgctgt--ctgttttggtcgaaccgtag--cttgcatgc-tcaccatggatcgccatctgttccagGAAAAGCAGCGGCTTCTCGCGCGGCGCTTCGATCTACCGGGGAGTCACCAG
    ||||  || ||| |||| |  |      ||  |||          |  ||    ||  |||   | | | |  ||  |  | || | |||||||||||| ||||||||||| ||||||||||||||||| |||||||||||
gtacactgcgtagctacctatgaaatcgccaagtcactgaacgaacaagattgtgacactgacatctgtaaacctccatgtctgtttgctgcagGAAAAGCAGTGGCTTCTCGCGTGGCGCTTCGATCTACCGTGGAGTCACCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78092257|gb|DV520631.1|DV520631
EST:     GAGGAGATGAAGAACATGACCAGACAGGAGTACGTCGCTCACCTGAGAAG                         GAAAAGCAGCGGCTTCTCGCGCGGCGCTTCGATCTACCGGGGAGTCACCAG
genomic: GAGGAGATGAAGAACATGACCAGACAGGAGTACGTCGCTCACCTGAGAAGgtactgatac ... tctgttccagGAAAAGCAGCGGCTTCTCGCGCGGCGCTTCGATCTACCGGGGAGTCACCAG
EST: gi|76012118|gb|DT939288.1|DT939288
EST:     GAGGAGATGAAGAACATGACCAGACAGGAGTACGTCGCTCACCTGAGAAG                         GAAAAGCAGCGGCTTCTCGCGCGGCGCTTCGATCTACCGGGGAGTCACCAG
genomic: GAGGAGATGAAGAACATGACCAGACAGGAGTACGTCGCTCACCTGAGAAGgtactgatac ... tctgttccagGAAAAGCAGCGGCTTCTCGCGCGGCGCTTCGATCTACCGGGGAGTCACCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgttttggtcgaaccgtagcttgcatgctcaccatggatcgccatctgttccagGAAAAGCAGCGGCTTCTCGCGCGGCGCTTCGATCTACCGGGGAGTCACCAG
                          tgctcac  putative branch site (score: 2)
                                             tctgttcc  putative PPT