1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtacattctggtattctacttctgttcccacctaactaaatttgattgtttagttatttggataaactgaataatgaagtttttgtgtgcttaatgcagACTAAAGAAGTAATGGAGTTATCCAAACAAATTAGGCAGAAGATGAAGGATATTGATGCTTTTG
species | Zea mays |
transcript | GRMZM2G028096_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAGAGGATGCTAAGGCAGCTATTGCTATTTCTGTTACTGAGGTTACACAG ACTAAAGAAGTAATGGAGTTATCCAAACAAATTAGGCAGAAGATGAAGGATEST: gi|71764556|gb|DR962493.1|DR962493
genomic: AAGAGGATGCTAAGGCAGCTATTGCTATTTCTGTTACTGAGGTTACACAGgtacattctg ... cttaatgcagACTAAAGAAGTAATGGAGTTATCCAAACAAATTAGGCAGAAGATGAAGGAT
EST: AAGAGGATGCTAAGGCAGCTATTGCTATTTCTGTTACTGAGGTTACACAG ACTAAAGAAGTAATGGAGTTATCCAAACAAATTAGGCAGAAGATGAAGGATEST: gi|74232160|gb|DT640074.1|DT640074
genomic: AAGAGGATGCTAAGGCAGCTATTGCTATTTCTGTTACTGAGGTTACACAGgtacattctg ... cttaatgcagACTAAAGAAGTAATGGAGTTATCCAAACAAATTAGGCAGAAGATGAAGGAT
EST: AAGAGGATGCTAAGGCAGCTATTGCTATTTCTGTTACTGAGGTTACACAG ACTAAAGAAGTAATGGAGTTATCCAAACAAATTAGGCAGAAGATGAAGGATEST: gi|31910839|gb|CD651624.1|CD651624
genomic: AAGAGGATGCTAAGGCAGCTATTGCTATTTCTGTTACTGAGGTTACACAGgtacattctg ... cttaatgcagACTAAAGAAGTAATGGAGTTATCCAAACAAATTAGGCAGAAGATGAAGGAT
EST: AAGAGGATGCTAAGGCAGCTATTGCTATTTCTGTTACTGAGGTTACACAG ACTAAAGAAGTAATGGAGTTATCCAAACAAATTAGGCAGAAGATGAAGGAT
genomic: AAGAGGATGCTAAGGCAGCTATTGCTATTTCTGTTACTGAGGTTACACAGgtacattctg ... cttaatgcagACTAAAGAAGTAATGGAGTTATCCAAACAAATTAGGCAGAAGATGAAGGAT
attgtttagttatttggataaactgaataatgaagtttttgtgtgcttaatgcagACTAAAGAAGTAATGGAGTTATCCAAACAAATTAGGCAGAAGATGAAGGATATTGATGCTTTTG
gcttaat putative branch site (score: 4)
aataatgaagttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacattctggtattctacttctgttcccacctaactaaatttgattgtttagttatttggataaactgaataatgaagtttttgtgtgcttaatgcagACTAAAGAAGTAATGGAGTTATCCAAACAAATTAGGCAGAAGATGAAGGATATTGATGCTTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG