1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaggctgggagtcttctgtttatcttctgttttagcgagtttttctttacatggtattcctcgtactacccattcttcgatgtgtagGTTTTGAGAAACCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTGCAAGGGGCTTGATGTCATTCAGCAAGCACAATCTGGTACAGGAAAGACAGC
species | Zea mays |
transcript | GRMZM2G027995_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGATGACATGGGCCTTCAAGAGAATCTTTTGAGAGGCATTTATGCATATG GTTTTGAGAAACCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTGCAEST: gi|211079538|gb|FL286131.1|FL286131
genomic: TGATGACATGGGCCTTCAAGAGAATCTTCTGAGAGGCATTTATGCATATGgtaggctggg ... cgatgtgtagGTTTTGAGAAACCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTGCA
EST: TGATGACATGGGCCTTCAAGAGAATCTTTTGAGAGGCATTTATGCATATG GTTTTGAGAAACCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTGCAEST: gi|8368624|gb|BE051569.1|BE051569
genomic: TGATGACATGGGCCTTCAAGAGAATCTTCTGAGAGGCATTTATGCATATGgtaggctggg ... cgatgtgtagGTTTTGAGAAACCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTGCA
EST: GATGACATGGGCCTTCAAGAGAATCTTCTGAGAGGCATTTATGCCATATG GTTTTGAGAAACCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTGCEST: gi|31354357|gb|CD438714.1|CD438714
genomic: GATGACATGGGCCTTCAAGAGAATCTTCTGAGAGGCATTTATGC-ATATGgtaggctggg ... cgatgtgtagGTTTTGAGAAACCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTGC
EST: TGATGACATGGGCCTTCAAGAGAATCTTCTGAGAGGCATTTATGCATATG GTTTTGAGAAACCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTGCAEST: gi|31357673|gb|CD442030.1|CD442030
genomic: TGATGACATGGGCCTTCAAGAGAATCTTCTGAGAGGCATTTATGCATATGgtaggctggg ... cgatgtgtagGTTTTGAGAAACCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTGCA
EST: CCATGACATGGGCCTTCAAGAGAATCTTCTGAGAGGCATTTATGCATATG GTTTTGAGAAACCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTGCAEST: gi|32851137|gb|CD990818.1|CD990818
genomic: TGATGACATGGGCCTTCAAGAGAATCTTCTGAGAGGCATTTATGCATATGgtaggctggg ... cgatgtgtagGTTTTGAGAAACCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTGCA
EST: TGATGACATGGGCCTTCAAGAGAATCTTCTGAGAGGCATTTATGCATATG GTTTTGAGAAACCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTGCAEST: gi|67041361|gb|CO467616.1|CO467616
genomic: TGATGACATGGGCCTTCAAGAGAATCTTCTGAGAGGCATTTATGCATATGgtaggctggg ... cgatgtgtagGTTTTGAGAAACCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTGCA
EST: TGATGACATGGGCCTTCAAGAGAATCTTCTGAGAGGCATTTATGCATATG GTTTTGAGAAACCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTGCAEST: gi|211288318|gb|FL286178.1|FL286178
genomic: TGATGACATGGGCCTTCAAGAGAATCTTCTGAGAGGCATTTATGCATATGgtaggctggg ... cgatgtgtagGTTTTGAGAAACCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTGCA
EST: TGATGACATGGGCCTTCAAGAGAATCTTTTGAGAGGCATTTATGCATATG GTTTTGAGAAACCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTGCAEST: gi|211294754|gb|FL286234.1|FL286234
genomic: TGATGACATGGGCCTTCAAGAGAATCTTCTGAGAGGCATTTATGCATATGgtaggctggg ... cgatgtgtagGTTTTGAGAAACCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTGCA
EST: GATGGACATGGGCCTTCAAGAGAATCTTTTGAGAGGCATTTATGCATATG GTTTTGAGAAACCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTGCAEST: gi|67031983|gb|CO460732.1|CO460732
genomic: GATG-ACATGGGCCTTCAAGAGAATCTTCTGAGAGGCATTTATGCATATGgtaggctggg ... cgatgtgtagGTTTTGAGAAACCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTGCA
EST: TGATGACATGGGCCTTCAAGAGAATCTTCTGAGAGGCATTTATGCATATG GTTTTGAGAAACCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTGCAEST: gi|28931273|gb|CB334634.1|CB334634
genomic: TGATGACATGGGCCTTCAAGAGAATCTTCTGAGAGGCATTTATGCATATGgtaggctggg ... cgatgtgtagGTTTTGAGAAACCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTGCA
EST: TGATGACATGGGCCTTCAAGAGAATCTTCTGAGAGGCATTTATGCATATG GTTTTGAGAAACCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTGCAEST: gi|31354677|gb|CD439034.1|CD439034
genomic: TGATGACATGGGCCTTCAAGAGAATCTTCTGAGAGGCATTTATGCATATGgtaggctggg ... cgatgtgtagGTTTTGAGAAACCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTGCA
EST: TGATGACATGGGCCTTCAAGAGAATCTTCTGAGAGGCATTTATGCATATG GTTTTGAGAAACCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTGCAEST: gi|32933416|gb|CF038228.1|CF038228
genomic: TGATGACATGGGCCTTCAAGAGAATCTTCTGAGAGGCATTTATGCATATGgtaggctggg ... cgatgtgtagGTTTTGAGAAACCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTGCA
EST: TGATGACATGGGCCTTCAAGAGAATCTTCTGAGAGGCATTTATGCATATG GTTTTGAGAAACCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTGCAEST: gi|31351797|gb|CD436154.1|CD436154
genomic: TGATGACATGGGCCTTCAAGAGAATCTTCTGAGAGGCATTTATGCATATGgtaggctggg ... cgatgtgtagGTTTTGAGAAACCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTGCA
EST: TGATGACATGGGCCTTCAAGAGAATCTTCTGAGAGGCATTTATGCATATG GTTTTGAGAAACCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTGCAEST: gi|31359138|gb|CD443495.1|CD443495
genomic: TGATGACATGGGCCTTCAAGAGAATCTTCTGAGAGGCATTTATGCATATGgtaggctggg ... cgatgtgtagGTTTTGAGAAACCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTGCA
EST: TGATGACATGGGCCTTCAAGAGAATCTTCTGAGAGGCATTTATGCATATG GTTTTGAGAAACCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTGCAEST: gi|22715433|gb|BU197760.1|BU197760
genomic: TGATGACATGGGCCTTCAAGAGAATCTTCTGAGAGGCATTTATGCATATGgtaggctggg ... cgatgtgtagGTTTTGAGAAACCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTGCA
EST: TGATGACATGGGCCTTCAAGAGAATCTTCTGAGAGGCATTTATGCATATG GTTTTGAGAAACCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTGCAEST: gi|211290464|gb|FL286197.1|FL286197
genomic: TGATGACATGGGCCTTCAAGAGAATCTTCTGAGAGGCATTTATGCATATGgtaggctggg ... cgatgtgtagGTTTTGAGAAACCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTGCA
EST: TGATGACATGGGCCTTCAAGAGAATCTTTTGAGAGGCATTTATGCATATG GTTTTGAGAAACCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTGCAEST: gi|211082280|gb|FL286149.1|FL286149
genomic: TGATGACATGGGCCTTCAAGAGAATCTTCTGAGAGGCATTTATGCATATGgtaggctggg ... cgatgtgtagGTTTTGAGAAACCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTGCA
EST: TGATGACATGGGCCTTCAAGAGAATCTTTTGAGAGGCATTTATGCATATG GTTTTGAGAAACCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTGCAEST: gi|14646056|gb|BI180245.1|BI180245
genomic: TGATGACATGGGCCTTCAAGAGAATCTTCTGAGAGGCATTTATGCATATGgtaggctggg ... cgatgtgtagGTTTTGAGAAACCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTGCA
EST: TGATGACATGGGCCTTCAAGAGAATCTTCTGAGAGGCATTTATGCATATG GTTTTGAGAAACCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTGCAEST: gi|29946169|gb|CB816014.1|CB816014
genomic: TGATGACATGGGCCTTCAAGAGAATCTTCTGAGAGGCATTTATGCATATGgtaggctggg ... cgatgtgtagGTTTTGAGAAACCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTGCA
EST: TGATGACATGGGCCTTCAAGAGAATCTTCTGAGAGGCATTTATGCATATG GTTTTGAGAAACCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTGCAEST: gi|20811047|gb|BQ295525.1|BQ295525
genomic: TGATGACATGGGCCTTCAAGAGAATCTTCTGAGAGGCATTTATGCATATGgtaggctggg ... cgatgtgtagGTTTTGAGAAACCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTGCA
EST: TGATGACATGGGCCTTCAAGAGAATCTTCTGAGAGGCATTTATGCATATG GTTTTGAGAAACCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTGCAEST: gi|31356525|gb|CD440882.1|CD440882
genomic: TGATGACATGGGCCTTCAAGAGAATCTTCTGAGAGGCATTTATGCATATGgtaggctggg ... cgatgtgtagGTTTTGAGAAACCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTGCA
EST: TGATGACATGGGCCTTCAAGAGAATCTTCTGAGAGGCATTTATGCATATG GTTTTGAGAAACCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTTTTEST: gi|31349540|gb|CD433897.1|CD433897
genomic: TGATGACATGGGCCTTCAAGAGAATCTTCTGAGAGGCATTTATGCATATGgtaggctggg ... cgatgtgtagGTTTTGAGAAACCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTGCA
EST: TGATGACATGGGCCTTCAAGAGAATCTTCTGAGAGGCATTTATGCATATG GTTTTGAGAAACCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTGCAEST: gi|8368623|gb|BE051568.1|BE051568
genomic: TGATGACATGGGCCTTCAAGAGAATCTTCTGAGAGGCATTTATGCATATGgtaggctggg ... cgatgtgtagGTTTTGAGAAACCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTGCA
EST: TGATGACATGGGCCTTCAAGAGAATCTTCTGAGAGGCATTTATGCATATG GTTTTGAGAAACCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTGCAEST: gi|32933398|gb|CF038210.1|CF038210
genomic: TGATGACATGGGCCTTCAAGAGAATCTTCTGAGAGGCATTTATGCATATGgtaggctggg ... cgatgtgtagGTTTTGAGAAACCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTGCA
EST: TGATGACATGGGCCTTCAAGAGAATCTTCTGAGAGGCATTTATACATATG GTTTTGAGAAACCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTGCAEST: gi|30306982|gb|CD001655.1|CD001655
genomic: TGATGACATGGGCCTTCAAGAGAATCTTCTGAGAGGCATTTATGCATATGgtaggctggg ... cgatgtgtagGTTTTGAGAAACCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTGCA
EST: TGATGACATGGGCCTTCAAGAGAATCTTCTGAGAGGCATTTATGCATATG GTTTTGAGAAACCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTGCAEST: gi|31353577|gb|CD437934.1|CD437934
genomic: TGATGACATGGGCCTTCAAGAGAATCTTCTGAGAGGCATTTATGCATATGgtaggctggg ... cgatgtgtagGTTTTGAGAAACCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTGCA
EST: TGATGACATGGGCCTTCAAGAGAATCTTCTGAGAGGCATTTATGCATATG GTTTTGAGAAACCATCTGCAATTCATTTTTTATGAATTGTTCCCTTCTGCAEST: gi|32851113|gb|CD990794.1|CD990794
genomic: TGATGACATGGGCCTTCAAGAGAATCTTCTGAGAGGCATTTATGCATATGgtaggctggg ... cgatgtgtagGTTTTGAGAAACCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTGCA
EST: TGATGACATGGGCCTTCAAGAGAATCTTCTGAGAGGCATTTATGCATATG GTTTTGAGAAACCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTGCAEST: gi|67017759|gb|CO446508.1|CO446508
genomic: TGATGACATGGGCCTTCAAGAGAATCTTCTGAGAGGCATTTATGCATATGgtaggctggg ... cgatgtgtagGTTTTGAGAAACCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTGCA
EST: TGATGACATGGGCCTTCAAGAGAATCTTCTGAGAGGCATTTATGCATATG GTTTTGAGAAACCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTGCA
genomic: TGATGACATGGGCCTTCAAGAGAATCTTCTGAGAGGCATTTATGCATATGgtaggctggg ... cgatgtgtagGTTTTGAGAAACCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTGCA
tagcgagtttttctttacatggtattcctcgtactacccattcttcgatgtgtagGTTTTGAGAAACCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTGCAAGGGGCTTGATGTCATTCAGCAAGCACAATCTGGTACAGGAAAGACAGC
cccattcttc CT-rich tract
tttttcttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggctgggagtcttctgtttatcttctgttttagcgagtttttctttacatggtattcctcgtactacccattcttcgatgtgtagGTTTTGAGAAACCATCTGCAATTCAGCAGAGAGGAATTGTTCCCTTCTGCAAGGGGCTTGATGTCATTCAGCAAGCACAATCTGGTACAGGAAAGACAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG