1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtcagcaagaggtcactcaagaactgggtggtaaacgatcttagtagacacaacacaactcctcatcttgtattgtatccatctctcagGAAACATGAAACAAAATCCCGTGGCGTCCAATCGCTGTCGTCTGGATACTGTAGGTAAACGCGTTCAGAGAGCGCAAAGCTCTCGCCCTGACGCTCAACG
species | Zea mays |
transcript | GRMZM2G027891_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAGCTCTGAAGGCGATGGATCTTTTCGAAGGAGCGCAGGAGCACAACAGG GAAACATGAAACAAAATCCCGTGGCGTCCAATCGCTGTCGTCTGGATACTGEST: gi|211093439|gb|FK978455.1|FK978455
genomic: AAGCTCTGAAGGCGATGGATCTTTTCGAAGGAGCGCAGGAGCACAACAGGgtcagcaaga ... catctctcagGAAACATGAAACAAAATCCCGTGGCGTCCAATCGCTGTCGTCTGGATACTG
EST: AAGCTCTGAAGGCGATGGATCTTTTCGAAGGAGCGCAGGAGCACAACAGG GAAACATGAAACAAAATCCCGTGGCGTCCAATCGCTGTCGTCTGGATACTGEST: gi|211093440|gb|FK978456.1|FK978456
genomic: AAGCTCTGAAGGCGATGGATCTTTTCGAAGGAGCGCAGGAGCACAACAGGgtcagcaaga ... catctctcagGAAACATGAAACAAAATCCCGTGGCGTCCAATCGCTGTCGTCTGGATACTG
EST: AAGCTCTGAAGGCGATGGATCTTTTCGAAGGAGCGCAGGAGCACAACAGG GAAACATGAAACAAAATCCCGTGGCGTCCAATCGCTGTCGTCTGGATACTG
genomic: AAGCTCTGAAGGCGATGGATCTTTTCGAAGGAGCGCAGGAGCACAACAGGgtcagcaaga ... catctctcagGAAACATGAAACAAAATCCCGTGGCGTCCAATCGCTGTCGTCTGGATACTG
acgatcttagtagacacaacacaactcctcatcttgtattgtatccatctctcagGAAACATGAAACAAAATCCCGTGGCGTCCAATCGCTGTCGTCTGGATACTGTAGGTAAACGCGTTCAGAGAGCGCAAAGCTCTCGCCCTGACGCTCAACG
tccatctctc CT-rich tract
tattgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagcaagaggtcactcaagaactgggtggtaaacgatcttagtagacacaacacaactcctcatcttgtattgtatccatctctcagGAAACATGAAACAAAATCCCGTGGCGTCCAATCGCTGTCGTCTGGATACTGTAGGTAAACGCGTTCAGAGAGCGCAAAGCTCTCGCCCTGACGCTCAACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG