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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtcatgaaatggtcggcttttgtgctatgcatgctgttcccactttcactatgcacttcccaccttttggacatctctcatgtctcccaccacccgaatactatatttcagGCGCAATAGCGATATTCAGCAGAATGAACATTGGGACGCTAGATGTCGGGGATTTTCTCG

Basic information

species Zea mays
transcript GRMZM2G027851_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G027851_T03 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os07g47100.2 (Oryza sativa), 3'ss of exon 3
gtatgtcat----gaaatggtcggcttttgtgctatgcat----gctgttcccactttcactatgcacttcccaccttttggacatctctcatgtctcccaccacccgaatactatatttcagGCGCAATAGCGATATTCAGCAGAATGAACATTGGGACGCTAGATGTCGGGGATTTTCTCG
||| ||  |    |||||| |      || | |  ||  |      || |  || ||||  |     | |   ||||||||||| |||   || |||  | |    | | | ||  |||||||  || || || ||||||||||||||||||||||| ||||| ||||| || |||||||| |
gtacgttctttcagaaatgattcttaattcttccgtgagttggtagtgctttcattttctgttgttccgtgtaaccttttggacttctgagat-tctgactctgatcaatttcttaatttcagCTGCCATTGCAATATTCAGCAGAATGAACATTGGAACGCTGGATGTAGGAGATTTTCTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74239375|gb|DT647289.1|DT647289
EST:     ACTATTCGGTGCTGTTGGCACAATGATATCCTTCTTCACAATCTCTCTCG                         GCGCAATAGCGATATTCAGCAGAATGAACATTGGGACGCTAGATGTCGGGG
genomic: ACTATTCGGTGCTGTTGGCACAATGATATCCTTCTTCACAATCTCTCTCGgtatgtcatg ... tatatttcagGCGCAATAGCGATATTCAGCAGAATGAACATTGGGACGCTAGATGTCGGGG
EST: gi|50333105|gb|CO528231.1|CO528231
EST:     ACTATTCGGTGCTGTTGGCACAATGATATCCTTCTTCACAATCTCTCTCG                         GCGCAATAGCGATATTCAGCAGAATGAACATTGGGACGCTAGATGTCGGGG
genomic: ACTATTCGGTGCTGTTGGCACAATGATATCCTTCTTCACAATCTCTCTCGgtatgtcatg ... tatatttcagGCGCAATAGCGATATTCAGCAGAATGAACATTGGGACGCTAGATGTCGGGG
EST: gi|78080130|gb|DV508542.1|DV508542
EST:     ACTATTCGGTGCTGTTGGCACAATGATATCCTTCTTCACAATCTCTCTCG                         GCGCAATAGCGATATTCAGCAGAATGAACATTGGGACGCTAGATGTCGGGG
genomic: ACTATTCGGTGCTGTTGGCACAATGATATCCTTCTTCACAATCTCTCTCGgtatgtcatg ... tatatttcagGCGCAATAGCGATATTCAGCAGAATGAACATTGGGACGCTAGATGTCGGGG
EST: gi|74238599|gb|DT646513.1|DT646513
EST:     ACTATTCGGTGCTGTTGGCACAATGATATCCTTCTTCACAATCTCTCTCG                         GCGCAATAGCGATATTCAGCAGAATGAACATTGGGACGCTAGATGTCGGGG
genomic: ACTATTCGGTGCTGTTGGCACAATGATATCCTTCTTCACAATCTCTCTCGgtatgtcatg ... tatatttcagGCGCAATAGCGATATTCAGCAGAATGAACATTGGGACGCTAGATGTCGGGG
EST: gi|93282181|gb|EB674445.1|EB674445
EST:     ACTATTCGGTGCTGTTGGCACAATGATATCCTTCTTCACAATCTCTCTCG                         GCGCAATAGCGATATTCAGCAGAATGAACATTGGGACGCTAGATGTCGGGG
genomic: ACTATTCGGTGCTGTTGGCACAATGATATCCTTCTTCACAATCTCTCTCGgtatgtcatg ... tatatttcagGCGCAATAGCGATATTCAGCAGAATGAACATTGGGACGCTAGATGTCGGGG
EST: gi|78093453|gb|DV521827.1|DV521827
EST:     ACTATTCGGTGCTGTTGGCACAATGATATCCTTCTTCACAATCTCTCTCG                         GCGCAATAGCGATATTCAGCAGAATGAACATTGGGACGCTAGATGTCGGGG
genomic: ACTATTCGGTGCTGTTGGCACAATGATATCCTTCTTCACAATCTCTCTCGgtatgtcatg ... tatatttcagGCGCAATAGCGATATTCAGCAGAATGAACATTGGGACGCTAGATGTCGGGG
EST: gi|78115473|gb|DV533861.1|DV533861
EST:     ACTATTCGGTGCTGTTGGCACAATGATATCCTTCTTCACAATCTCTCTCG                         GCGCAATAGCGATATTCAGCAGAATGAACATTGGGACGCTAGATGTCGGGG
genomic: ACTATTCGGTGCTGTTGGCACAATGATATCCTTCTTCACAATCTCTCTCGgtatgtcatg ... tatatttcagGCGCAATAGCGATATTCAGCAGAATGAACATTGGGACGCTAGATGTCGGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcccaccttttggacatctctcatgtctcccaccacccgaatactatatttcagGCGCAATAGCGATATTCAGCAGAATGAACATTGGGACGCTAGATGTCGGGGATTTTCTCG
                                        aatactatatttca  TA-rich tract