1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gaagtaaaatgggaaagaacagttcactctgtgcacaccacgcagctgctaatacgtacataaaacatctagtagttctgatgatgtatgtccgatgcagATGCTCTTCACAAGTTCCATATGGTCATGATCTTGTCTCAAGTAGAGGATCGTACAGCGATGAATGGCATGCAGATTTACTTGGCTGCTGTTCAGAACCG
species | Zea mays |
transcript | GRMZM2G027821_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTAAGAAGCAAAAGGATACCTGCAGCACACAACG ATGCTCTTCACAAGTTCCATATGGTCATGATCTTGTCTCAAGTAGAGGATCEST: gi|60357315|gb|DN224288.1|DN224288
genomic: CTAAGAAGCAAAAGGAAACCTGCAGCACACAACGgtcagtaaac ... tccgatgcagATGCTCTTCACAAGTTCCATATGGTCATGATCTTGTCTCAAGTAGAGGATC
EST: CAAAACGATGACTATCCTAAGAAGCAAAAGGAAACCTGCAGCACACAACG ATGCTCTTCACAAGTTCCATATGGTCATGATCTTGTCTCAAGTAGAGGATCEST: gi|74235248|gb|DT643162.1|DT643162
genomic: CAAAACGATGACTATCCTAAGAAGCAAAAGGAAACCTGCAGCACACAACGgtcagtaaac ... tccgatgcagATGCTCTTCACAAGTTCCATATGGTCATGATCTTGTCTCAAGTAGAGGATC
EST: CAAAACGATGACTATCCTAAGAAGCAAAAGGAAACCTGCAGCACACAACG ATGCTCTTCACAAGTTCCATATGGTCATGATCTTGTCTCAAGTAGAGGATC
genomic: CAAAACGATGACTATCCTAAGAAGCAAAAGGAAACCTGCAGCACACAACGgtcagtaaac ... tccgatgcagATGCTCTTCACAAGTTCCATATGGTCATGATCTTGTCTCAAGTAGAGGATC
ctgctaatacgtacataaaacatctagtagttctgatgatgtatgtccgatgcagATGCTCTTCACAAGTTCCATATGGTCATGATCTTGTCTCAAGTAGAGGATCGTACAGCGATGAATGGCATGCAGATTTACTTGGCTGCTGTTCAGAACCG
tacataaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaagtaaaatgggaaagaacagttcactctgtgcacaccacgcagctgctaatacgtacataaaacatctagtagttctgatgatgtatgtccgatgcagATGCTCTTCACAAGTTCCATATGGTCATGATCTTGTCTCAAGTAGAGGATCGTACAGCGATGAATGGCATGCAGATTTACTTGGCTGCTGTTCAGAACCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
-aagtaaaa
- - - - - - - aagaaca
- - - - - - - - - - - - - - - - - -caccacg
- - - - - - - - - - - - - - - - - - - - - - gctgcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -acataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgat