1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tctgcacctctgttgggcacttcatatatttatctgtaatctggtccattacttctgcaagttcctgagttgtgtgctataacctttccaaaacttccagAAATTTTTGAGTTTGACGCCATGGAAGATCCTCCATCAGTGATGGAAATACATGTGTATGATTTCGATGGACCGTTCGACAAAGTTGCCTCCCTTGGTCA
species | Zea mays |
transcript | GRMZM2G027665_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TAAGTTTCACACCCTCGAGCCTCAGTGGAATG AAATTTTTGAGTTTGACGCCATGGAAGATC
genomic: TAAGTTTCACACCCTCGAGCCTCAGTGGAATGgtaaacctat ... aaacttccagAAATTTTTGAGTTTGACGCCATGGAAGATC
ccattacttctgcaagttcctgagttgtgtgctataacctttccaaaacttccagAAATTTTTGAGTTTGACGCCATGGAAGATCCTCCATCAGTGATGGAAATACATGTGTATGATTTCGATGGACCGTTCGACAAAGTTGCCTCCCTTGGTCA
ctataac putative branch site (score: 44)
cttcc putative PPT
aaaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctgcacctctgttgggcacttcatatatttatctgtaatctggtccattacttctgcaagttcctgagttgtgtgctataacctttccaaaacttccagAAATTTTTGAGTTTGACGCCATGGAAGATCCTCCATCAGTGATGGAAATACATGTGTATGATTTCGATGGACCGTTCGACAAAGTTGCCTCCCTTGGTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
-ctgcacc
- - - - -ctgttgg
- - - - - - - - gcacttc
- - - - - - - - - - - - - - - - - - - - ctggtcc
- - - - - - - - - - - - - - - - - - - - - - - - - -cttctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttcctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgcta