1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cagttaatctatctgtataatctggccagttaagtttgcagattagtagttgaaaggagtaccatgtgaccttgaccttgttatttattctctgtttcagGCATTTGGTCGTACCCCTTTGACTAACATAAGCCCTAAGAAAACCTTGGAGGGTGCTTTAGCTGGCCTAGCTGGCTGTGTGCTGACCACTGTGCTGCTGT
species | Zea mays |
transcript | GRMZM2G027043_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTATTAGTAGCATCATTGCTGCTGATACATCTGCTTTCCTTTGTGGAAGG GCATTTGGTCGTACCCCTTTGACTAACATAAGCCCTAAGAAAACCTTGGAGEST: gi|32928631|gb|CF033443.1|CF033443
genomic: CTATTAGTAGCATCATTGCTGCTGATACATCTGCTTTCCTTTGTGGAAGGgtacactcta ... tctgtttcagGCATTTGGTCGTACCCCTTTGACTAACATAAGCCCTAAGAAAACCTTGGAG
EST: CTATTAGTAGCATCATTGCTGCTGATACATCTGCTTTCCTTTGTGGAAGG GCATTTGGTCGTEST: gi|91056794|gb|EB167212.1|EB167212
genomic: CTATTAGTAGCATCATTGCTGCTGATACATCTGCTTTCCTTTGTGGAAGGgtacactcta ... tctgtttcagGCATTTGGTCGT
EST: TTTGT-GAAGGG GCATTTGGTCGTACCCCTTTGACTAACATAAGCCCTAAGAAAACCTTGGAEST: gi|91056795|gb|EB167213.1|EB167213
genomic: TTTGTGGAA-GGgtacactcta ... tctgtttcagGCATTTGGTCGTACCCCTTTGACTAACATAAGCCCTAAGAAAACCTTGGA
EST: CTATTAGTAGCATCATTGCTGCTGATACATCTGCTTTCCTTTGTGGAAGG GCATTTGGTCGTACCCCTTTGACTAACATAAGCCCTAAGAAAACCTTGGAGEST: gi|32928742|gb|CF033554.1|CF033554
genomic: CTATTAGTAGCATCATTGCTGCTGATACATCTGCTTTCCTTTGTGGAAGGgtacactcta ... tctgtttcagGCATTTGGTCGTACCCCTTTGACTAACATAAGCCCTAAGAAAACCTTGGAG
EST: CTATTAGTAGCATCATTGCTGCTGATACATCTGCTTTCCTT-GTGGAAGG GCATTTGGTCGT
genomic: CTATTAGTAGCATCATTGCTGCTGATACATCTGCTTTCCTTTGTGGAAGGgtacactcta ... tctgtttcagGCATTTGGTCGT
gtagttgaaaggagtaccatgtgaccttgaccttgttatttattctctgtttcagGCATTTGGTCGTACCCCTTTGACTAACATAAGCCCTAAGAAAACCTTGGAGGGTGCTTTAGCTGGCCTAGCTGGCTGTGTGCTGACCACTGTGCTGCTGT
ccttgac putative branch site (score: 104)
tttattctctgtttc putative PPT
ttgttatttattct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagttaatctatctgtataatctggccagttaagtttgcagattagtagttgaaaggagtaccatgtgaccttgaccttgttatttattctctgtttcagGCATTTGGTCGTACCCCTTTGACTAACATAAGCCCTAAGAAAACCTTGGAGGGTGCTTTAGCTGGCCTAGCTGGCTGTGTGCTGACCACTGTGCTGCTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - tgcagat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgtga