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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taagttgatactcctaattgcatccagttgttgaatgtcattttgtactgtcttattttcaaacaaaaatgtctagttataatgaactttctggttgcagAATGGTGACCCTCGGCTGTCATGCTTTGGTCTGATGAAAAACAGCAGGGATGGAAAAAGCTATAGCACGAACCTAGCATATACACCTCCAGAATATCTGA

Basic information

species Zea mays
transcript GRMZM2G026767_T03
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G026767_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os10g39670.1 (Oryza sativa), 3'ss of exon 3
taagttga-tactcctaattgcatc-cagttg-ttgaat---gtcattttgtactgtcttattttcaaacaaaaatgtctagttataatgaactttctggttgcagAATGGTGACCCTCGGCTGTCATGCTTTGGTCTGATGAAAAACAGCAGGGATGGAAAAAGCTATAGCACGAACCTAGCATATACACCTCCAGAATATCTGA
| |||  | ||  | |  |   |||  ||||| ||| ||      |||  | |     | || ||  || |||| | |||| |||      |||||||  | |||||||||||| ||||| || |||||||||||| |||||||||||||||||||||| ||||| ||||| || ||||| |||||||||||||||||||||||||
tgagtcaagtaggctttgtaagatcatagttgattgcattcaacaattcagcatgccatcatgttgtaagaaaagtttctaatta------actttcttatcgcagAATGGTGATCCTCGTCTATCATGCTTTGGTTTGATGAAAAACAGCAGGGATGGGAAAAGTTATAGTACAAACCTGGCATATACACCTCCAGAATATCTGA

upper sequence: GRMZM2G026767_T01 (Zea mays), 3'ss of exon 3
lower sequence: Vv18s0001g00180.t01 (Vitis vinifera), 3'ss of exon 3
---taagttgatact--cctaattgcatccagttgttgaatgtcattttgtactgtcttattttcaaacaaaaatgtctagttataatgaactttctggtt---gcagAATGGTGACCCTCGGCTGTCATGCTTTGGTCTGATGAAAAACAGCAGGGATGGAAAAAGCTATAGCACGAACCTAGCATATACACCTCCAGAATATCTGA
     ||| || | |  |||  ||| ||  |       |||   | | | |   | |  |||   |   || |    | |||  |||   | |   |||||   |||||||||||| || ||||| || ||||||||| |||||||||| ||||| ||||||||||| || ||||| || || || ||||||||||| || ||||| |
taaccagtagacattttcctggttgtattga-------aataaaactatctggagaccaattagtag-taatagcaacaagtggtaacttattggttggttttagcagAATGGTGATCCACGGCTTTCTTGCTTTGGTATGATGAAAAATAGCAGAGATGGAAAAAGTTACAGCACAAATCTTGCCTATACACCTCCTGAGTATCTAA

upper sequence: GRMZM2G026767_T01 (Zea mays), 3'ss of exon 3
lower sequence: EFJ20301 (Selaginella moellendorffii), 3'ss of exon 3
taagttgatactcctaattgcatccagttgttgaatgtcattttgtactgtcttattttcaaacaaaaatgtctagttataatgaactttctggttgcagAATGGTGACCCTCGGCTGTCATGCTTTGGTCTGATGAAAAACAGCAGGGATGGAAAAAGCTATAGCACGAACCTAGCATATACACCTCCAGAATATCTGA
                                    ||  ||||  |   | ||  || |   | |   | |  | | |         ||    |||||| | ||||| || || || || || || ||||||||||| |||||| | || || || ||||||||||||||| | |||||||||||||| |||||  || 
------------------------------------gtgctttttaatccttttcgttccctcctagtgtatgcattaactgcagctgtt----ttgcagGACGGTGATCCGCGCCTCTCTTGTTTCGGTCTGATGAAGAACAGCCGAGACGGCAAGAGCTATAGCACGAACTTGGCATATACACCTCCTGAATACTTGC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76937605|gb|DV175198.1|DV175198
EST:     GGTGGCCTTTATATCATGACCTAAATGCATACAGGGTCCTCTTTGATGAG                         AATGGTGACCCTCGGCTGTCATGCTTTGGTCTGATGAAAAACAGCAGGGAT
genomic: GGTGGCCTTTATATCATGACCTAAATGCATACAGGGTCCTCTTTGATGAGgtaaatgggc ... ctggttgcagAATGGTGACCCTCGGCTGTCATGCTTTGGTCTGATGAAAAACAGCAGGGAT
EST: gi|76937335|gb|DV175108.1|DV175108
EST:     GGTGGCCTTTATATCATGACCTAAATGCATACAGGGTCCTCTTTGATGAG                         AATGGTGACCCTCGGCTGTCATGCTTTGGTCTGATGAAAAACAGCAGGGAT
genomic: GGTGGCCTTTATATCATGACCTAAATGCATACAGGGTCCTCTTTGATGAGgtaaatgggc ... ctggttgcagAATGGTGACCCTCGGCTGTCATGCTTTGGTCTGATGAAAAACAGCAGGGAT
EST: gi|149098700|gb|EE184712.2|EE184712
EST:     GGTGGCCTTTATATCATGACCTAAATGCATACAGGGTCCTCTTTGATGAG                         AATGGTGACCCTCGGCTGTCATGCTTTGGTCTGATGAAAAACAGCAGGGAT
genomic: GGTGGCCTTTATATCATGACCTAAATGCATACAGGGTCCTCTTTGATGAGgtaaatgggc ... ctggttgcagAATGGTGACCCTCGGCTGTCATGCTTTGGTCTGATGAAAAACAGCAGGGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tactgtcttattttcaaacaaaaatgtctagttataatgaactttctggttgcagAATGGTGACCCTCGGCTGTCATGCTTTGGTCTGATGAAAAACAGCAGGGATGGAAAAAGCTATAGCACGAACCTAGCATATACACCTCCAGAATATCTGA
                                         ctttct  CT-rich tract
       ttattttcaaacaaaa  TA-rich tract