1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtcagctgactcgtcctcgctgtccaaccaagtcgtctcagccttcattattagctcggccatcttttcaataattaataataacatctgcatctagcagGAACCCGTCCTTCCCGGCGCCTTCCTCCGCGCCAGGGCCATCGGCCTCATGCCTATGATAGATCAG
species | Zea mays |
transcript | GRMZM2G026470_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGACGCTCTGCGAGGACAACGACCCCATGGACGTCCTCGTGCTCATGCAG GAACCCGTCCTTCCCGGCGCCTTCCTCCGCGCCAGGGCCATCGGCCTCATGEST: gi|71331881|gb|DR802819.1|DR802819
genomic: GGACGCTCTGCGAGGACAACGACCCCATGGACGTCCTCGTGCTCATGCAGgtcagctgac ... catctagcagGAACCCGTCCTTCCCGGCGCCTTCCTCCGCGCCAGGGCCATCGGCCTCATG
EST: GGACGCTCTGCGAGGACAACGACCCCATGGACGTCCTCGTGCTCATGCAG GAACCCGTCCTTCCCGGCGCCTTCCTCCGCGCCAGGGCCATCGGCCTCATGEST: gi|60352307|gb|DN219280.1|DN219280
genomic: GGACGCTCTGCGAGGACAACGACCCCATGGACGTCCTCGTGCTCATGCAGgtcagctgac ... catctagcagGAACCCGTCCTTCCCGGCGCCTTCCTCCGCGCCAGGGCCATCGGCCTCATG
EST: GGACGCTCTGCGAGGACAACGACCCCATGGACGTCCTCGTGCTCATGCAG GAACCCGTCCTTCCCGGCGCCTTCCTCCGCGCCAGGGCCATCGGCCTCATGEST: gi|71331880|gb|DR802818.1|DR802818
genomic: GGACGCTCTGCGAGGACAACGACCCCATGGACGTCCTCGTGCTCATGCAGgtcagctgac ... catctagcagGAACCCGTCCTTCCCGGCGCCTTCCTCCGCGCCAGGGCCATCGGCCTCATG
EST: GGACGCTCTGCGAGGACAACGACCCCATGGACGTCCTCGTGCTCATGCAG GAACCCGTCCTTCCCGGCGCCTTCCTCCGCGCCAGGGCCATCGGCCTCATGEST: gi|20300295|gb|BQ163238.1|BQ163238
genomic: GGACGCTCTGCGAGGACAACGACCCCATGGACGTCCTCGTGCTCATGCAGgtcagctgac ... catctagcagGAACCCGTCCTTCCCGGCGCCTTCCTCCGCGCCAGGGCCATCGGCCTCATG
EST: GGACGCTCTGCGAGGACAACGACCCCATGGACGTCCTCGTGCTCATGCAG GAACCCGTCCTTCCCGGCGCCTTCCTCCGCGCCAGGGCCATCGGCCTCATGEST: gi|211434006|gb|FL392555.1|FL392555
genomic: GGACGCTCTGCGAGGACAACGACCCCATGGACGTCCTCGTGCTCATGCAGgtcagctgac ... catctagcagGAACCCGTCCTTCCCGGCGCCTTCCTCCGCGCCAGGGCCATCGGCCTCATG
EST: GGACGCTCTGCGAGGACAACGACCCCATGGACGTCCTCGTGCTCATGCAG GAACCCGTCCTTCCCGGCGCCTTCCTCCGCGCCAGGGCCATCGGCCTCATGEST: gi|60400572|gb|DN233379.1|DN233379
genomic: GGACGCTCTGCGAGGACAACGACCCCATGGACGTCCTCGTGCTCATGCAGgtcagctgac ... catctagcagGAACCCGTCCTTCCCGGCGCCTTCCTCCGCGCCAGGGCCATCGGCCTCATG
EST: GGACGCTCTGCGAGGACAACGACCCCATGGACGTCCTCGTGCTCATGCAG GAACCCGTCCTTCCCGGCGCCTTCCTCCGCGCCAGGGCCATCGGCCTCATGEST: gi|60344571|gb|DN211544.1|DN211544
genomic: GGACGCTCTGCGAGGACAACGACCCCATGGACGTCCTCGTGCTCATGCAGgtcagctgac ... catctagcagGAACCCGTCCTTCCCGGCGCCTTCCTCCGCGCCAGGGCCATCGGCCTCATG
EST: GGACGCTCTGCGAGGACAACGACCCCATGGACGTCCTCGTGCTCATGCAG GAACCCGTCCTTCCCGGCGCCTTCCTCCGCGCCAGGGCCATCGGCCTCATGEST: gi|20300766|gb|BQ163709.1|BQ163709
genomic: GGACGCTCTGCGAGGACAACGACCCCATGGACGTCCTCGTGCTCATGCAGgtcagctgac ... catctagcagGAACCCGTCCTTCCCGGCGCCTTCCTCCGCGCCAGGGCCATCGGCCTCATG
EST: GGACGCTCTGCGAGGACAACGACCCCATGGACGTCCTCGTGCTCATGCAG GAACCCGTCCTTCCCGGCGCCTTCCTCCGCGCCAGGGCCATCGGCCTCATG
genomic: GGACGCTCTGCGAGGACAACGACCCCATGGACGTCCTCGTGCTCATGCAGgtcagctgac ... catctagcagGAACCCGTCCTTCCCGGCGCCTTCCTCCGCGCCAGGGCCATCGGCCTCATG
cattattagctcggccatcttttcaataattaataataacatctgcatctagcagGAACCCGTCCTTCCCGGCGCCTTCCTCCGCGCCAGGGCCATCGGCCTCATGCCTATGATAGATCAG
taataac putative branch site (score: 56)
atcttttcaataatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagctgactcgtcctcgctgtccaaccaagtcgtctcagccttcattattagctcggccatcttttcaataattaataataacatctgcatctagcagGAACCCGTCCTTCCCGGCGCCTTCCTCCGCGCCAGGGCCATCGGCCTCATGCCTATGATAGATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA