1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtattacttcttgttcttcagtcacatggttaatctgatgttattaggagcagctgaattattgcagtgaaattatctagtcaatttctgtaaaaggaaaaaaacaaaacaaaactatctagtcactatacacgttttgaccattgttacagCTTCCAGCGATTGAGGTTCTCTCCACTCTACCTCATCAGCGGGGTCAGTTACGGCCACCTATAAATTTGCTGGTGATGTGCCCTACTAGGGAGCTTGCAA
species | Zea mays |
transcript | GRMZM2G026371_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGTTCTTGCAAAGGCAAAGACAGGAACTGGGAAAACAGTTGCCTTTTTG CTTCCAGCGATTGAGGTTCTCTCCACTCTACCTCATCAGCGGGGTCAGTTAEST: gi|211421657|gb|FL422375.1|FL422375
genomic: ATGTTCTTGCAAAGGCAAAGACAGGAACTGGGAAAACAGTTGCCTTTTTGgtattacttc ... attgttacagCTTCCAGCGATTGAGGTTCTCTCCACTCTACCTCATCAGCGGGGTCAGTTA
EST: TGTTCTTGCAAAGGCAAAGACAGGAACTGGGAAAACAGTTGCCTTTTTTG CTTC-AGCGATTGEST: gi|211228025|gb|FL407500.1|FL407500
genomic: TGTTCTTGCAAAGGCAAAGACAGGAACTGGGAAAACAGTTGCCTTTTT-Ggtattacttc ... attgttacagCTTCCAGCGATTG
EST: ATGTTCTTGCAAAGGCAAAGACAGGAACTGGGAAAACAGTTGCCTTTTTG CTTCCAGCGATTGAGGTTCTCTCCACTCTACCTCATCAGCGGGGTCAGTTAEST: gi|78113699|gb|DV532088.1|DV532088
genomic: ATGTTCTTGCAAAGGCAAAGACAGGAACTGGGAAAACAGTTGCCTTTTTGgtattacttc ... attgttacagCTTCCAGCGATTGAGGTTCTCTCCACTCTACCTCATCAGCGGGGTCAGTTA
EST: ATGTTCTTGCAAAGGCAAAGACAGGAACTGGGAAAACAGTTGCCTTTTTG CTTCCAGCGATTGAGGTTCTCTCCACTCTACCTCATCAGCGGGGTCAGTTAEST: gi|148937869|gb|EC882088.2|EC882088
genomic: ATGTTCTTGCAAAGGCAAAGACAGGAACTGGGAAAACAGTTGCCTTTTTGgtattacttc ... attgttacagCTTCCAGCGATTGAGGTTCTCTCCACTCTACCTCATCAGCGGGGTCAGTTA
EST: ATGTTCTTGCAAAGGCAAAGACAGGAACTGGGAAAACAGTTGCCTTTTTG CTTCCAGCGATTGAGGTTCTCTCCACTCTACCTCATCAGCGGGGGCAGTTAEST: gi|148947601|gb|EC893080.2|EC893080
genomic: ATGTTCTTGCAAAGGCAAAGACAGGAACTGGGAAAACAGTTGCCTTTTTGgtattacttc ... attgttacagCTTCCAGCGATTGAGGTTCTCTCCACTCTACCTCATCAGCGGGGTCAGTTA
EST: ATGTTCTTGCAAAGGCAAAGACAGGAACTGGGAAAACAGTTGCCTTTTTG CTTCCAGCGATTGAGGTTCTCTCCACTCTACCTCATCAGCGGGGTCAGTTAEST: gi|148955992|gb|EC901719.2|EC901719
genomic: ATGTTCTTGCAAAGGCAAAGACAGGAACTGGGAAAACAGTTGCCTTTTTGgtattacttc ... attgttacagCTTCCAGCGATTGAGGTTCTCTCCACTCTACCTCATCAGCGGGGTCAGTTA
EST: ATGTTCTTGCAAAGGCAAAGACAGGAACTGGGAAAACAGTTGCCTTTTTG CTTCCAGCGATTGAGGTTCTCTCCACTCTACCTCATCAGCGGGGTCAGTTA
genomic: ATGTTCTTGCAAAGGCAAAGACAGGAACTGGGAAAACAGTTGCCTTTTTGgtattacttc ... attgttacagCTTCCAGCGATTGAGGTTCTCTCCACTCTACCTCATCAGCGGGGTCAGTTA
aaaaaaacaaaacaaaactatctagtcactatacacgttttgaccattgttacagCTTCCAGCGATTGAGGTTCTCTCCACTCTACCTCATCAGCGGGGTCAGTTACGGCCACCTATAAATTTGCTGGTGATGTGCCCTACTAGGGAGCTTGCAA
ttttgac putative branch site (score: 56)
aaaacaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattacttcttgttcttcagtcacatggttaatctgatgttattaggagcagctgaattattgcagtgaaattatctagtcaatttctgtaaaaggaaaaaaacaaaacaaaactatctagtcactatacacgttttgaccattgttacagCTTCCAGCGATTGAGGTTCTCTCCACTCTACCTCATCAGCGGGGTCAGTTACGGCCACCTATAAATTTGCTGGTGATGTGCCCTACTAGGGAGCTTGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT