1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgtgctgcaatttgttgctgttgcacttatgtagatcataagccctattgatttatccattttctgtggtttcaagGCTCTATTCAATTCCTTGCCCCCTGAAGATTATGTGGGTGCAACCCTTGTACTTGGGGGTGATGGCCGGTACTTTAACAAGGAGGCTGCTCAGGTACAGA
species | Zea mays |
transcript | GRMZM2G025854_T05 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAG GCTCTATTCAATTCCTTTGCCCCCTGAAGATTATGTGGGTGCCACCCTEST: gi|149095269|gb|EE180897.2|EE180897
genomic: GTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAGgtgtgctgca ... tggtttcaagGCTCTATTCAATTCCTT-GCCCCCTGAAGATTATGTGGGTGCAACCCT
EST: GTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAG GCTCTATTCAATTCCTTGCCCCCTGAAGATTATGTGGGTGCAACCCTTGTAEST: gi|211022174|gb|FL153047.1|FL153047
genomic: GTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAGgtgtgctgca ... tggtttcaagGCTCTATTCAATTCCTTGCCCCCTGAAGATTATGTGGGTGCAACCCTTGTA
EST: GTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAG GCTCTATTCAATTCCTTGCCCCCTGAAGATTATGTGGGTGCAACCCTTGTA
genomic: GTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAGgtgtgctgca ... tggtttcaagGCTCTATTCAATTCCTTGCCCCCTGAAGATTATGTGGGTGCAACCCTTGTA
tgcacttatgtagatcataagccctattgatttatccattttctgtggtttcaagGCTCTATTCAATTCCTTGCCCCCTGAAGATTATGTGGGTGCAACCCTTGTACTTGGGGGTGATGGCCGGTACTTTAACAAGGAGGCTGCTCAGGTACAGA
tattgat putative branch site (score: 52)
ttttctgt putative PPT
tattgatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgctgcaatttgttgctgttgcacttatgtagatcataagccctattgatttatccattttctgtggtttcaagGCTCTATTCAATTCCTTGCCCCCTGAAGATTATGTGGGTGCAACCCTTGTACTTGGGGGTGATGGCCGGTACTTTAACAAGGAGGCTGCTCAGGTACAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT