1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
gtgtgctgcaatttgttgctgttgcacttatgtagatcataagccctattgatttatccattttctgtggtttcaagGCTCTATTCAATTCCTTGCCCCCTGAAGATTATGTGGGTGCAACCCTTGTACTTGGGGGTGATGGCCGGTACTTTAACAAGGAGGCTGCTCAG
species | Zea mays |
transcript | GRMZM2G025854_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTGAAAGTATTCCAGCAGGAGAACTACCTTGCNTANT-GGATTCAG GCTCTATTCAATTCCTTGCCCCCTGAAAGAT-ATGTGGGTGCAACCCTTGTEST: gi|211456112|gb|FL153033.1|FL153033
genomic: GTGAAAGTATTCCAGCAGGAGAACTACCTTGC-TAATTGGATTCAGgtgtgctgca ... tggtttcaagGCTCTATTCAATTCCTTGCCCCCTGAA-GATTATGTGGGTGCAACCCTTGT
EST: GTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAG GCTCTATTCAATTCCTTGCCCCCTGAAGATTATGTGGGTGCAACCCTTGTAEST: gi|211022165|gb|FL153038.1|FL153038
genomic: GTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAGgtgtgctgca ... tggtttcaagGCTCTATTCAATTCCTTGCCCCCTGAAGATTATGTGGGTGCAACCCTTGTA
EST: GTGAAAGTGTTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAG GCTCTATTCAATTCCTTGCCCCCTGAAGATTATGTGGGTGCAACCCTTGTAEST: gi|211456113|gb|FL153034.1|FL153034
genomic: GTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAGgtgtgctgca ... tggtttcaagGCTCTATTCAATTCCTTGCCCCCTGAAGATTATGTGGGTGCAACCCTTGTA
EST: GTGAAAGTGTTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAG GCTCTATTCAATTCCTTGCCCCCTGAAGATTATGTGGGTGCAACCCTTGTAEST: gi|211022172|gb|FL153045.1|FL153045
genomic: GTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAGgtgtgctgca ... tggtttcaagGCTCTATTCAATTCCTTGCCCCCTGAAGATTATGTGGGTGCAACCCTTGTA
EST: GTGAGAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAG GCTCTATTCAATTCCTTGCCCCCTGAAGATTATGTGGGTGCAACCCTTGTAEST: gi|211024619|gb|FL153052.1|FL153052
genomic: GTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAGgtgtgctgca ... tggtttcaagGCTCTATTCAATTCCTTGCCCCCTGAAGATTATGTGGGTGCAACCCTTGTA
EST: GTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAG GCTCTATTCAATTCCTTGCCCCCTGAAGATTATGTGGGTGCAACCCTTGTAEST: gi|211022174|gb|FL153047.1|FL153047
genomic: GTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAGgtgtgctgca ... tggtttcaagGCTCTATTCAATTCCTTGCCCCCTGAAGATTATGTGGGTGCAACCCTTGTA
EST: GTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAG GCTCTATTCAATTCCTTGCCCCCTGAAGATTATGTGGGTGCAACCCTTGTAEST: gi|211456114|gb|FL153035.1|FL153035
genomic: GTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAGgtgtgctgca ... tggtttcaagGCTCTATTCAATTCCTTGCCCCCTGAAGATTATGTGGGTGCAACCCTTGTA
EST: GTGAAAGTGTTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAG GCTCTATTCAATTCCTTGCCCCCTGAAGATTATGTGGGTGCAACCCTTGTAEST: gi|211022173|gb|FL153046.1|FL153046
genomic: GTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAGgtgtgctgca ... tggtttcaagGCTCTATTCAATTCCTTGCCCCCTGAAGATTATGTGGGTGCAACCCTTGTA
EST: GTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAG GCTCTATTCAATTCCTTGCCCCCTGAAGATTATGTGGGTGCAACCCTTGTAEST: gi|211456115|gb|FL153036.1|FL153036
genomic: GTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAGgtgtgctgca ... tggtttcaagGCTCTATTCAATTCCTTGCCCCCTGAAGATTATGTGGGTGCAACCCTTGTA
EST: GTGAAAGTGTTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAG GCTCTATTCAATTCCTTGCCCCCTGAAGATTATGTGGGTGCAACCCTTGNAEST: gi|89759099|gb|DY688027.1|DY688027
genomic: GTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAGgtgtgctgca ... tggtttcaagGCTCTATTCAATTCCTTGCCCCCTGAAGATTATGTGGGTGCAACCCTTGTA
EST: GTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAG GCTCTATTCAATTCCTTTGCCCCCTGAAGATTATGTGGGTGCCACCCTEST: gi|50333167|gb|CO528293.1|CO528293
genomic: GTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAGgtgtgctgca ... tggtttcaagGCTCTATTCAATTCCTT-GCCCCCTGAAGATTATGTGGGTGCAACCCT
EST: GTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAG GCTCTATTCAATTCCTTGCCCCCTGAAGATTATGTGGGTGCAACCCTTGTAEST: gi|74238594|gb|DT646508.1|DT646508
genomic: GTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAGgtgtgctgca ... tggtttcaagGCTCTATTCAATTCCTTGCCCCCTGAAGATTATGTGGGTGCAACCCTTGTA
EST: GTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAG GCTCTATTCAATTCCTTGCCCCCTGAAGATTATGTGGGTGCAACCCTTGTAEST: gi|211022178|gb|FL153051.1|FL153051
genomic: GTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAGgtgtgctgca ... tggtttcaagGCTCTATTCAATTCCTTGCCCCCTGAAGATTATGTGGGTGCAACCCTTGTA
EST: GTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAG GCTCTATTCAATTCCTTGCCCCCTGAAGATTATGTGGGTGCAACCCTTGTAEST: gi|211022177|gb|FL153050.1|FL153050
genomic: GTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAGgtgtgctgca ... tggtttcaagGCTCTATTCAATTCCTTGCCCCCTGAAGATTATGTGGGTGCAACCCTTGTA
EST: GTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAG GCTCTATTCAATTCCTTGCCCCCTGAAGATTATGTGGGTGCAACCCTTGTAEST: gi|211022175|gb|FL153048.1|FL153048
genomic: GTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAGgtgtgctgca ... tggtttcaagGCTCTATTCAATTCCTTGCCCCCTGAAGATTATGTGGGTGCAACCCTTGTA
EST: GTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAG GCTCTATTCAATTCCTTGCCCCCTGAAGATTATGTGGGTGCAACCCTTGTAEST: gi|211022168|gb|FL153041.1|FL153041
genomic: GTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAGgtgtgctgca ... tggtttcaagGCTCTATTCAATTCCTTGCCCCCTGAAGATTATGTGGGTGCAACCCTTGTA
EST: GTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAG GCTCTATTCAATTCCTTGCCCCCTGAAGATTATGTGGGTGCAACCCTTGTA
genomic: GTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAGgtgtgctgca ... tggtttcaagGCTCTATTCAATTCCTTGCCCCCTGAAGATTATGTGGGTGCAACCCTTGTA
tgcacttatgtagatcataagccctattgatttatccattttctgtggtttcaagGCTCTATTCAATTCCTTGCCCCCTGAAGATTATGTGGGTGCAACCCTTGTACTTGGGGGTGATGGCCGGTACTTTAACAAGGAGGCTGCTCAG
tattgat putative branch site (score: 3)
ttttctgt putative PPT
tattgatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgctgcaatttgttgctgttgcacttatgtagatcataagccctattgatttatccattttctgtggtttcaagGCTCTATTCAATTCCTTGCCCCCTGAAGATTATGTGGGTGCAACCCTTGTACTTGGGGGTGATGGCCGGTACTTTAACAAGGAGGCTGCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT