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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtaaaatcatgcgtgatcttgctactcttttccctgatattgggtttgggggcagaatggtacttatctaatttgaaatcaaagaagtttgtgtctgcagGGTTTGGATTTTCTGATAAGCCTCAACCAAAATATGGTTTTGACTATACACTTGATG

Basic information

species Zea mays
transcript GRMZM2G025659_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G025659_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g69060.1 (Oryza sativa), 3'ss of exon 6
-gtaaaatcatgcgtgatcttgctactcttttccctgatattgggtttgggggcagaatggtacttatctaatttgaaatcaaagaagtttgtgtctgcagGGTTTGGATTTTCTGATAAGCCTCAACCAAAATATGGTTTTGACTATACACTTGATG
 | | || ||||| |  | | | || |  |    || |  |||     |   |||    | || ||  |||| |||||| ||||||| |||||||||||||| ||||| || || ||||||||||||||  | ||||||||||||||||| |||||||
tgaacaaccatgcctt-tttggttaatgctgctgctcagtttgtaggagtaagcatgtagatatttgcctaacttgaaaacaaagaactttgtgtctgcagGTTTTGGGTTCTCAGATAAGCCTCAACCCGATTATGGTTTTGACTATACTCTTGATG

upper sequence: GRMZM2G025659_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA03G23870.1 (Glycine max), 3'ss of exon 6
-gtaaaatcatgcgtga-tcttgctact--cttttccctgatattgggtttgggggcagaatggtacttatctaatttgaaatcaaagaagtttgtgtctgcagGGTTTGGATTTTCTGATAAGCCTCAACCAAAATATGGTTTTGACTATACACTTGATG
     | ||||   ||| | ||  ||||  |  |||  | || |     ||   | ||  |      ||    ||  | |   ||   |   ||   ||| |||| ||||| |||||||| ||||||||||| | |||||| |||||||| ||||| ||||
ttctcattcatttttgaatttttttactggcacttcattaatttattaattcacgacaacagaa---ttggaaaagctcactccatttattctttcatct-cagGATTTGGGTTTTCTGACAAGCCTCAACCCAGATATGGGTTTGACTACACACTGGATG

upper sequence: GRMZM2G025659_T01 (Zea mays), 3'ss of exon 3
lower sequence: Vv07s0151g00860.t01 (Vitis vinifera), 3'ss of exon 6
gtaaaatcatgcgtgatcttg---ctactcttttccctgatattgggtttgggggcagaatggtacttatctaatttgaaatcaaagaagtttgtgtctgcagGGTTTGGATTTTCTGATAAGCCTCAACCAAAATATGGTTTTGACTATACACTTGATG
  | | |         |  ||     ||  |||| | ||||| |   | | |  || ||    || | |   || ||    ||       | |   ||| |||| ||||||||||| |||||||||||||| ||||||||||||||||| ||  | ||||
-cagagttcacttcagttctgagatcacattttttcatgataatatttattgatgctgagc--taatgaaggaacttttcttcctttccctcttcttctacagGCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCTTGGATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgggggcagaatggtacttatctaatttgaaatcaaagaagtttgtgtctgcagGGTTTGGATTTTCTGATAAGCCTCAACCAAAATATGGTTTTGACTATACACTTGATG
                    atctaat  putative branch site (score: 3)
                  ttatctaatttgaaat  TA-rich tract