1 5' 3' | 2 5' 3' | 3 5' 3' |
...gagatatggaacttcttttggcgcttttaattaataatgtcgagtcagagtaagtttgatggtcaggcccactaatcctcgatactgcattatgttctagGCAATGTGGGTCAGGACTACGCCATCTTTGAGCAAGGCGCTTCTGCAGGAAATGTTGGGAATGAGAACCTTGTGGAGCAGAAGAAAGCAAACCCTGTCGC
species | Zea mays |
transcript | GRMZM2G025366_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGGCTGCAGGTATTGTTGGAGGGACGGGCATCATGCCTGGAG GCAATGTGGGTCAGGACTACGCCATCTTTGAGCAAGGCGCTTCTGCAGGAAEST: gi|148959186|gb|EE010640.2|EE010640
genomic: CGGCTGCAGGTATTGTTGGAGGGACGGGCATCATGCCTGGAGgtagggattg ... tatgttctagGCAATGTGGGTCAGGACTACGCCATCTTTGAGCAAGGCGCTTCTGCAGGAA
EST: GGCTAACACGGCTGCAGGTATTGTTGGAGGGACGGGCATCATGCCTGGAG GCAATGTGGGTCAGGACTACGCCATCTTTGAGCAAGGCGCTTCTGCAGGAAEST: gi|28984414|gb|BQ539547.2|BQ539547
genomic: GGCTAACACGGCTGCAGGTATTGTTGGAGGGACGGGCATCATGCCTGGAGgtagggattg ... tatgttctagGCAATGTGGGTCAGGACTACGCCATCTTTGAGCAAGGCGCTTCTGCAGGAA
EST: GACGGGCATCATGCCTGGAG GCAATGTGGGTCAGGACTACGCCATCTTTAAGCAAGGCGCTTCTGCAGGAAEST: gi|76285692|gb|DV025260.1|DV025260
genomic: GACGGGCATCATGCCTGGAGgtagggattg ... tatgttctagGCAATGTGGGTCAGGACTACGCCATCTTTGAGCAAGGCGCTTCTGCAGGAA
EST: GGCTAACACGGCTGCAGGTATTGTTGGAGGGACGGGCATCATGCCTGGAG GCAATGTGGGTCAGGACTACGCCATCTTTGAGCAAGGCGCTTCTGCAGGAA
genomic: GGCTAACACGGCTGCAGGTATTGTTGGAGGGACGGGCATCATGCCTGGAGgtagggattg ... tatgttctagGCAATGTGGGTCAGGACTACGCCATCTTTGAGCAAGGCGCTTCTGCAGGAA
cagagtaagtttgatggtcaggcccactaatcctcgatactgcattatgttctagGCAATGTGGGTCAGGACTACGCCATCTTTGAGCAAGGCGCTTCTGCAGGAAATGTTGGGAATGAGAACCTTGTGGAGCAGAAGAAAGCAAACCCTGTCGC
cactaat putative branch site (score: 376)
attatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagatatggaacttcttttggcgcttttaattaataatgtcgagtcagagtaagtttgatggtcaggcccactaatcctcgatactgcattatgttctagGCAATGTGGGTCAGGACTACGCCATCTTTGAGCAAGGCGCTTCTGCAGGAAATGTTGGGAATGAGAACCTTGTGGAGCAGAAGAAAGCAAACCCTGTCGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA