1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtacatacagcctagcctcacggaaactagtatctcgtcgtgattgtttctgggatgtcttggtttctatattgtagtaataactggatcattgtttgccaaacaaactgttggaatccatttgcactttgcagACAAGGGCCCCCAGCAAGCTATCATCTGCGTTTTCTGGTACTCAGGATAAGTGTGCAGCTTGCCAGAAAACAGTGTACCCGCTGGAGAAG
species | Zea mays |
transcript | GRMZM2G024887_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTGGCAAGTCTTCAGACAAGGGTGAACTG ACAAGGGCCCCCAGCAAGCTATCATCTGCNTTTTCTGGTACTCAGGATAAGEST: gi|211455531|gb|FL349675.1|FL349675
genomic: GTGGCAAGTCTTCAGACAAGGGTGAACTGgtacatacag ... cactttgcagACAAGGGCCCCCAGCAAGCTATCATCTGCGTTTTCTGGTACTCAGGATAAG
EST: GTGGCAAGTCTTCAGACAAGGGTGAACTG ACAAGGGCCCCCAGCAAGCTATCATCTGCGTTTTCTGGTACTCAGGATAAGEST: gi|21480972|gb|BQ577655.1|BQ577655
genomic: GTGGCAAGTCTTCAGACAAGGGTGAACTGgtacatacag ... cactttgcagACAAGGGCCCCCAGCAAGCTATCATCTGCGTTTTCTGGTACTCAGGATAAG
EST: GTGGCAAGTCTTCAGACAAGGGTGAACTG ACAAGGGCCCCCAGCAAGCTATCATCTGCGTTTTCTGGTACTCAGGATAAGEST: gi|211378105|gb|FL329996.1|FL329996
genomic: GTGGCAAGTCTTCAGACAAGGGTGAACTGgtacatacag ... cactttgcagACAAGGGCCCCCAGCAAGCTATCATCTGCGTTTTCTGGTACTCAGGATAAG
EST: GTGGCAAGTCTTCAGACAAGGGTGAACTG ACAAGGGCCCCCAGCAAGCTATCATCTGCGTTTTCTGGTACTCAGGATAAGEST: gi|32869494|gb|CF009176.1|CF009176
genomic: GTGGCAAGTCTTCAGACAAGGGTGAACTGgtacatacag ... cactttgcagACAAGGGCCCCCAGCAAGCTATCATCTGCGTTTTCTGGTACTCAGGATAAG
EST: GTGGCAAGTCTTCAGACAAGGGTGAACTG ACAAGGGCCCCCAGCAAGCTATCATCTGCGTTTTCTGGTACTCAGGATAAGEST: gi|32870818|gb|CF010500.1|CF010500
genomic: GTGGCAAGTCTTCAGACAAGGGTGAACTGgtacatacag ... cactttgcagACAAGGGCCCCCAGCAAGCTATCATCTGCGTTTTCTGGTACTCAGGATAAG
EST: GTGGCAAGTCTTCAGACAAGGGTGAACTG ACAAGGGCCCCCAGCAAGCTATCATCTGCGTTTTCTGGTACTCAGGATAAGEST: gi|211331555|gb|FL357939.1|FL357939
genomic: GTGGCAAGTCTTCAGACAAGGGTGAACTGgtacatacag ... cactttgcagACAAGGGCCCCCAGCAAGCTATCATCTGCGTTTTCTGGTACTCAGGATAAG
EST: GTGGCAAGTCTTCAGACAAGGGTGAACTG ACAAGGGCCCCCAGCAAGCTATCATCTGCGTTTTCTGGTACTCAGGATAAGEST: gi|211007496|gb|FL346568.1|FL346568
genomic: GTGGCAAGTCTTCAGACAAGGGTGAACTGgtacatacag ... cactttgcagACAAGGGCCCCCAGCAAGCTATCATCTGCGTTTTCTGGTACTCAGGATAAG
EST: GTGGCAAGTCTTCAGACAAGGGTGAACTG ACAAGGGCCCCCAGCAAGCTATCATCTGCGTTTTCTGGTACTCAGGATAAGEST: gi|18661649|gb|BM501509.1|BM501509
genomic: GTGGCAAGTCTTCAGACAAGGGTGAACTGgtacatacag ... cactttgcagACAAGGGCCCCCAGCAAGCTATCATCTGCGTTTTCTGGTACTCAGGATAAG
EST: GTGGCAAGTCTTCAGACAAGGGTGAACTG ACAAGGGCCCCCAGCAAGCTATCATCTGCGTTTTCTGGTACTCAGGATAAGEST: gi|21480781|gb|BQ577464.1|BQ577464
genomic: GTGGCAAGTCTTCAGACAAGGGTGAACTGgtacatacag ... cactttgcagACAAGGGCCCCCAGCAAGCTATCATCTGCGTTTTCTGGTACTCAGGATAAG
EST: GTGGCAAGTCTTCAGACAAGGGTGAACTG ACAAGGGCCCCCAGCAAGCTATCATCTGCGTTTTCTGGTACTCAGGATAAGEST: gi|211267283|gb|FL319971.1|FL319971
genomic: GTGGCAAGTCTTCAGACAAGGGTGAACTGgtacatacag ... cactttgcagACAAGGGCCCCCAGCAAGCTATCATCTGCGTTTTCTGGTACTCAGGATAAG
EST: GTGGCAAGTSTTCAGACAAGGGTGAACTG ACAAGGGCCCCCAGCAAGCTATCATCTGCGTTTTCTGGTACTCAGGATAAGEST: gi|26455128|gb|CA826711.1|CA826711
genomic: GTGGCAAGTCTTCAGACAAGGGTGAACTGgtacatacag ... cactttgcagACAAGGGCCCCCAGCAAGCTATCATCTGCGTTTTCTGGTACTCAGGATAAG
EST: GTGGCAAGTCTTCAGACAAGGGTGAACTG ACAAGGGCCCCCAGCAAGCTATCATCTGCGTTTTCTGGTACTCAGGATAAGEST: gi|21330893|gb|BQ486274.1|BQ486274
genomic: GTGGCAAGTCTTCAGACAAGGGTGAACTGgtacatacag ... cactttgcagACAAGGGCCCCCAGCAAGCTATCATCTGCGTTTTCTGGTACTCAGGATAAG
EST: GTGGCAAGTCTTCAGACAAGGGTGAACTG ACAAGGGCCCCCAGCAAGCTATCATCTGCGTTTTCTGGTACTCAGGATAAGEST: gi|21480794|gb|BQ577477.1|BQ577477
genomic: GTGGCAAGTCTTCAGACAAGGGTGAACTGgtacatacag ... cactttgcagACAAGGGCCCCCAGCAAGCTATCATCTGCGTTTTCTGGTACTCAGGATAAG
EST: GTGGCAAGTCTTCAGACAAGGGTGAACTG ACAAGGGCCCCCAGCAAGCTATCATCTGCGTTTTCTGGTACTCAGGATAAGEST: gi|116819068|gb|EC862153.1|EC862153
genomic: GTGGCAAGTCTTCAGACAAGGGTGAACTGgtacatacag ... cactttgcagACAAGGGCCCCCAGCAAGCTATCATCTGCGTTTTCTGGTACTCAGGATAAG
EST: GTGGCGAGTCTTCAGACAAGGGTGAACTG ACAAGGGCCCCCAGCAAGCTATCATCTGCGTTTTCTGGTACTCAGGATAAGEST: gi|32868868|gb|CF008550.1|CF008550
genomic: GTGGCAAGTCTTCAGACAAGGGTGAACTGgtacatacag ... cactttgcagACAAGGGCCCCCAGCAAGCTATCATCTGCGTTTTCTGGTACTCAGGATAAG
EST: GTGGCAAGTCTTCAGACAAGGGTGAACTG ACAAGGGCCCCCAGCAAGCTATCATCTGCGTTTTCTGGTACTCAGGATAAGEST: gi|21330183|gb|BQ485564.1|BQ485564
genomic: GTGGCAAGTCTTCAGACAAGGGTGAACTGgtacatacag ... cactttgcagACAAGGGCCCCCAGCAAGCTATCATCTGCGTTTTCTGGTACTCAGGATAAG
EST: GTGGCAAGTCTTCAGACAAGGGTGAACTG ACAAGGGCCCCCAGCAAGCTATCATCTGCGTTTTCTGGTACTCAGGATAAGEST: gi|9743144|gb|BE519292.1|BE519292
genomic: GTGGCAAGTCTTCAGACAAGGGTGAACTGgtacatacag ... cactttgcagACAAGGGCCCCCAGCAAGCTATCATCTGCGTTTTCTGGTACTCAGGATAAG
EST: GTGGCAAGTCTTCAGACAAGGGTGAACTG ACAAGGGCCCCCAGCAAGCTATCATCTGCGTTTTCTGGTACTCAGGATAAGEST: gi|32869353|gb|CF009035.1|CF009035
genomic: GTGGCAAGTCTTCAGACAAGGGTGAACTGgtacatacag ... cactttgcagACAAGGGCCCCCAGCAAGCTATCATCTGCGTTTTCTGGTACTCAGGATAAG
EST: GTGGCAAGTCTTCAGACAAGGGTGAACTG ACAAGGGCCCCCAGCAAGCTATCATCTGCGTTTTCTGGTACTCAGGATAAGEST: gi|21330046|gb|BQ485441.1|BQ485441
genomic: GTGGCAAGTCTTCAGACAAGGGTGAACTGgtacatacag ... cactttgcagACAAGGGCCCCCAGCAAGCTATCATCTGCGTTTTCTGGTACTCAGGATAAG
EST: GTGGCAAGTCTTCAGACAAGGGTGAACTG ACAAGGGCCCCCAGCAAGCTATCATCTGCGTTTTCTGGTACTCAGGATAAGEST: gi|21330759|gb|BQ486140.1|BQ486140
genomic: GTGGCAAGTCTTCAGACAAGGGTGAACTGgtacatacag ... cactttgcagACAAGGGCCCCCAGCAAGCTATCATCTGCGTTTTCTGGTACTCAGGATAAG
EST: GTGGCAAGTCTTCAGACAAGGGTGAACTG ACAAGGGCCCCCAGCAAGCTATCATCTGCGTTTTCTGGTACTCAGGATAAGEST: gi|32906533|gb|CF011346.1|CF011346
genomic: GTGGCAAGTCTTCAGACAAGGGTGAACTGgtacatacag ... cactttgcagACAAGGGCCCCCAGCAAGCTATCATCTGCGTTTTCTGGTACTCAGGATAAG
EST: GTGGCAAGTCTTCAGACAAGGGTGAACTG ACAAGGGCCCCCAGCAAGCTATCATCTGCGTTTTCTGGTACTCAGGATAAGEST: gi|211130928|gb|FL366516.1|FL366516
genomic: GTGGCAAGTCTTCAGACAAGGGTGAACTGgtacatacag ... cactttgcagACAAGGGCCCCCAGCAAGCTATCATCTGCGTTTTCTGGTACTCAGGATAAG
EST: GTGGCAAGTCTTCAGACAAGGGTGAACTG ACAAGGGCCCCCAGCAAGCTATCATCTGCGTTTTCTGGTACTCAGGATAAGEST: gi|50325577|gb|CO520703.1|CO520703
genomic: GTGGCAAGTCTTCAGACAAGGGTGAACTGgtacatacag ... cactttgcagACAAGGGCCCCCAGCAAGCTATCATCTGCGTTTTCTGGTACTCAGGATAAG
EST: GTGGCAAGTCTTCAGACAAGGGTGAACTG ACAAGGGCCCCCAGCAAGCTATCATCTGCGTTTTCTGGTACTCAGGATAAGEST: gi|21330096|gb|BQ485477.1|BQ485477
genomic: GTGGCAAGTCTTCAGACAAGGGTGAACTGgtacatacag ... cactttgcagACAAGGGCCCCCAGCAAGCTATCATCTGCGTTTTCTGGTACTCAGGATAAG
EST: GTGGCAAGTCTTCAGACAAGGGTGAACTG ACAAGGGCCCCCAGCAAGCTATCATCTGCGTTTTCTGGTACTCAGGATAAGEST: gi|78109383|gb|DV527799.1|DV527799
genomic: GTGGCAAGTCTTCAGACAAGGGTGAACTGgtacatacag ... cactttgcagACAAGGGCCCCCAGCAAGCTATCATCTGCGTTTTCTGGTACTCAGGATAAG
EST: GTGGCAAGTCTTCAGACAAGGGTGAACTG ACAAGGGCCCCCAGCAAGCTATCATCTGCGTTTTCTGGTACTCAGGATAAG
genomic: GTGGCAAGTCTTCAGACAAGGGTGAACTGgtacatacag ... cactttgcagACAAGGGCCCCCAGCAAGCTATCATCTGCGTTTTCTGGTACTCAGGATAAG
ataactggatcattgtttgccaaacaaactgttggaatccatttgcactttgcagACAAGGGCCCCCAGCAAGCTATCATCTGCGTTTTCTGGTACTCAGGATAAGTGTGCAGCTTGCCAGAAAACAGTGTACCCGCTGGAGAAG
taataac putative branch site (score: 303)
attgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacatacagcctagcctcacggaaactagtatctcgtcgtgattgtttctgggatgtcttggtttctatattgtagtaataactggatcattgtttgccaaacaaactgttggaatccatttgcactttgcagACAAGGGCCCCCAGCAAGCTATCATCTGCGTTTTCTGGTACTCAGGATAAGTGTGCAGCTTGCCAGAAAACAGTGTACCCGCTGGAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA