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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagggtcttacacaattagatcccatggaatgatattggcaagattacacatgtatgactggataatacttctcctccttgctgtcatagACGGGCTGTTGAATATAATTGAACCATTTCACCGTTTTGTTGGAAAAGACATGATGACCGACTTGAGATATCCTATGAAGGGCAATACAGTGCCATTTTG

Basic information

species Zea mays
transcript GRMZM2G024615_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G024615_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os09g13870.4 (Oryza sativa), 3'ss of exon 1
----------gttagggtcttac-acaattagatcccatggaatgatattggcaagattacacatgtatgactggataatacttctcctccttgctgtc--atagACGGGCTGTTGAATATAATTGAACCATTTCACCGTTTTGT----TGGAAAAGACATGATGACCGACTTGAGATATCCTATGAAGGGCAATACAGTGCCATTTTG
           |||  ||   |    |   | ||  |||||| |  | ||   |  | |  |  |       | | |  | ||| |  |  ||| | |   |  |||    ||    || |  | | |   || |||  |   ||    |||||   |  ||  ||  ||||| | || | | |    ||  |||||     |   |||
ttttatttttattatagttgcattgtatccacattacatggagt--tgttattataactctagttactcactttgct--ttcttgttatgtttgttatttgaagGACACAATGGCAGATGTCTTAGGAT-GTTACACTATAAAGTCCCATGGAACCAAAGTGGCGA--GACTTCACATGTACGACT--GGATAATACTTCTACTCCTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78083130|gb|DV511523.1|DV511523
EST:     GCCGCACCGAGACAATGGCAGACCA                         ACGGGCTGTTGAATATAATTGAACCATTTCACCGTTTTGTTGGAAAAGACA
genomic: GCCGCACCGAGACAATGGCAGACCAgttagggtct ... gctgtcatagACGGGCTGTTGAATATAATTGAACCATTTCACCGTTTTGTTGGAAAAGACA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggcaagattacacatgtatgactggataatacttctcctccttgctgtcatagACGGGCTGTTGAATATAATTGAACCATTTCACCGTTTTGTTGGAAAAGACATGATGACCGACTTGAGATATCCTATGAAGGGCAATACAGTGCCATTTTG
                                 cttctcctccttgctg  CT-rich tract
                           ataatactt  TA-rich tract