1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgtcctggtatcattatcttttagtatgttttttcttttctcaaacacgcagaaaagttgtgcatcattatattaagaagaataggggtccaaatagagcaacaaaatgcaagcctccttatggaattatactgtcacatccatgcaaaagttcttgtgtggttcttaggctcttaactgtttttcttattttcagCTGATTGGAATTATACTGCCTTGGGCCATCTTTGTTGGAATTTACTTCAAGAAGAACAATTTTTATGATCTGCACCATGGCATACTGG
species | Zea mays |
transcript | GRMZM2G024615_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACTTGAGATATCCTATGAAGGGCAATACAGTGCCATTTTGGGCTGTTCCA CTGATTGGAATTATACTGCCTTGGGCCATCTTTGTTGGAATTTACTTCAAGEST: gi|78119084|gb|DV537468.1|DV537468
genomic: ACTTGAGATATCCTATGAAGGGCAATACAGTGCCATTTTGGGCTGTTCCAgtatgtcctg ... ttattttcagCTGATTGGAATTATACTGCCTTGGGCCATCTTTGTTGGAATTTACTTCAAG
EST: ACTTGAGATATCCTATGAAGGGCAATACAGTGCCATTTTGGGCTGTTCCA CTGATTGGAATTATACTGCCTTGGGCCATCTTTGTTGGAATTTACTTCAAGEST: gi|211293500|gb|FL337559.1|FL337559
genomic: ACTTGAGATATCCTATGAAGGGCAATACAGTGCCATTTTGGGCTGTTCCAgtatgtcctg ... ttattttcagCTGATTGGAATTATACTGCCTTGGGCCATCTTTGTTGGAATTTACTTCAAG
EST: ACTTGAGATATCCTATGAAGGGCAATACAGTGCCATTTTGGGCTGTTCCA CTGATTGGAATTATACTGCCTTGGGCCATCTTTGTTGGAATTTACTTCAAGEST: gi|149100619|gb|EE186707.2|EE186707
genomic: ACTTGAGATATCCTATGAAGGGCAATACAGTGCCATTTTGGGCTGTTCCAgtatgtcctg ... ttattttcagCTGATTGGAATTATACTGCCTTGGGCCATCTTTGTTGGAATTTACTTCAAG
EST: ACTTGAGATATCCTATGAAGGGCAATACAGTGCCATTTTGGGCTGTTCCA CTGATTGGAATTATACTGCCTTGGGCCATCTTTGTTGGAATTTACTTCAAGEST: gi|211322146|gb|FL315932.1|FL315932
genomic: ACTTGAGATATCCTATGAAGGGCAATACAGTGCCATTTTGGGCTGTTCCAgtatgtcctg ... ttattttcagCTGATTGGAATTATACTGCCTTGGGCCATCTTTGTTGGAATTTACTTCAAG
EST: ACTTGAGATATCCTATGAAGGGCAATACAGTGCCATTTTGGGCTGTTCCA CTGATTGGAATTATACTGCCTTGGGCCATCTTTGTTGGAATTTACTTCAAGEST: gi|149099698|gb|EE185747.2|EE185747
genomic: ACTTGAGATATCCTATGAAGGGCAATACAGTGCCATTTTGGGCTGTTCCAgtatgtcctg ... ttattttcagCTGATTGGAATTATACTGCCTTGGGCCATCTTTGTTGGAATTTACTTCAAG
EST: ACTTGAGATATCCTATGAAGGGCAATACAGTGCCATTTTGGGCTGTTCCA CTGATTGGAATTATACTGCCTTGGGCCATCTTTGTTGGAATTTACTTCAAG
genomic: ACTTGAGATATCCTATGAAGGGCAATACAGTGCCATTTTGGGCTGTTCCAgtatgtcctg ... ttattttcagCTGATTGGAATTATACTGCCTTGGGCCATCTTTGTTGGAATTTACTTCAAG
catgcaaaagttcttgtgtggttcttaggctcttaactgtttttcttattttcagCTGATTGGAATTATACTGCCTTGGGCCATCTTTGTTGGAATTTACTTCAAGAAGAACAATTTTTATGATCTGCACCATGGCATACTGG
tcttaac putative branch site (score: 2)
ctgtttttcttatttt CT-rich tract
tgtttttcttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtcctggtatcattatcttttagtatgttttttcttttctcaaacacgcagaaaagttgtgcatcattatattaagaagaataggggtccaaatagagcaacaaaatgcaagcctccttatggaattatactgtcacatccatgcaaaagttcttgtgtggttcttaggctcttaactgtttttcttattttcagCTGATTGGAATTATACTGCCTTGGGCCATCTTTGTTGGAATTTACTTCAAGAAGAACAATTTTTATGATCTGCACCATGGCATACTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC