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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatatccatgttgctaacttataagattgtggagttgttctgatcagttttgtcagattctttttgtataataatgtgtatttattggttgcatttgcagACAGTGAGCTACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATCGTCTTCCAG

Basic information

species Zea mays
transcript GRMZM2G024151_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G024151_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g14860.3 (Oryza sativa), 3'ss of exon 2
-----------------------------tatatccatgttgctaacttataagattgtggagttgttctgatcagttttgtcagattctttttgtataataatgtgtatttattggttgcatttgcagACAGTGAGCTACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATCGTCTTCCAG
                                |   |||         | |     | || | ||||||  |||  || |     | ||||  | | ||||    ||   || |||| |    ||||||||||| ||||||||||||||||| |||||||| |||||||| |||||||| |||||||||
gtgatttcctgataccatgttgtgatttcagaacaaatgccatctgactgtcgcgatctgaaattgttc--atcgattataaagcaatcttcatttctaat----tgatattcttggataatcttgcagACAGTTAGCTACATGGCTGAGCGTATTGTAGGGCAAGGTTCATTTGGGATTGTCTTCCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5566746|gb|AI881612.1|AI881612
EST:     GGCACATAATTGTCACCACTACTGGTGGCAAGAATGGTCAACCAAAACAG                         ACAGTGAGCTACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATC
genomic: GGCACATAATTGTCACCACTACTGGTGGCAAGAATGGTCAACCAAAACAGgtgagtgctt ... gcatttgcagACAGTGAGCTACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATC
EST: gi|19822195|gb|BQ048219.1|BQ048219
EST:     GGCACATAATTGTCACCACTACTGGTGGCAAGAATGGTCAACCAAAACAG                         ACAGTGAGCTACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATC
genomic: GGCACATAATTGTCACCACTACTGGTGGCAAGAATGGTCAACCAAAACAGgtgagtgctt ... gcatttgcagACAGTGAGCTACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATC
EST: gi|32928666|gb|CF033478.1|CF033478
EST:     GGCACATAATTGTCACCACTACTGGTGGCAAGAATGGTCAACCAAAACAG                         ACAGTGAGCTACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATC
genomic: GGCACATAATTGTCACCACTACTGGTGGCAAGAATGGTCAACCAAAACAGgtgagtgctt ... gcatttgcagACAGTGAGCTACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATC
EST: gi|32929341|gb|CF034153.1|CF034153
EST:     GGCACATAATTGTCACCACTACTGGTGGCAAGAATGGTCAACCAAAACAG                         ACAGTGAGCTACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATC
genomic: GGCACATAATTGTCACCACTACTGGTGGCAAGAATGGTCAACCAAAACAGgtgagtgctt ... gcatttgcagACAGTGAGCTACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATC
EST: gi|32928546|gb|CF033358.1|CF033358
EST:     GGCACATAATTGTCACCACTACTGGTGGCAAGAATGGTCAACCAAAACAG                         ACAGTGAGCTACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATC
genomic: GGCACATAATTGTCACCACTACTGGTGGCAAGAATGGTCAACCAAAACAGgtgagtgctt ... gcatttgcagACAGTGAGCTACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATC
EST: gi|26455791|gb|CA827374.1|CA827374
EST:     GGCACATAATTGTCACCACTACTGGTGGCAAGAATGGTCAACCAAAACAG                         ACAGTGAGCTACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATC
genomic: GGCACATAATTGTCACCACTACTGGTGGCAAGAATGGTCAACCAAAACAGgtgagtgctt ... gcatttgcagACAGTGAGCTACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATC
EST: gi|5566972|gb|AI881883.1|AI881883
EST:     GGCACATAATTGTCACCACTACTGGTGGCAAGAATGGTCAACCAAAACAG                         ACAGTGAGCTACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATC
genomic: GGCACATAATTGTCACCACTACTGGTGGCAAGAATGGTCAACCAAAACAGgtgagtgctt ... gcatttgcagACAGTGAGCTACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATC
EST: gi|6918384|gb|AW399914.1|AW399914
EST:     GGCACATAATTGTCACCACTACTGGTGGCAAGAATGGTCAACCAAAACAG                         ACAGTGAGCTACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATT
genomic: GGCACATAATTGTCACCACTACTGGTGGCAAGAATGGTCAACCAAAACAGgtgagtgctt ... gcatttgcagACAGTGAGCTACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATC
EST: gi|61117964|gb|DN558925.1|DN558925
EST:     GGCACATAATTGTCACCACTACTGGTGGCAAGAATGGTCAACCAAAACAG                         ACAGTGAGCTACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATT
genomic: GGCACATAATTGTCACCACTACTGGTGGCAAGAATGGTCAACCAAAACAGgtgagtgctt ... gcatttgcagACAGTGAGCTACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATC
EST: gi|5268665|gb|AI770629.1|AI770629
EST:     GGCACATAATTGTCACCACTACTGGTGGCAAGAATGGTCAACCAAAACAG                         ACAGTGAGCTACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATC
genomic: GGCACATAATTGTCACCACTACTGGTGGCAAGAATGGTCAACCAAAACAGgtgagtgctt ... gcatttgcagACAGTGAGCTACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATC
EST: gi|22542189|gb|BU092627.1|BU092627
EST:     GGCACATAATTGTCACCACTACTGGTGGCAAGAATGGTCAACCAAAACAG                         ACAGTGAGCTACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATC
genomic: GGCACATAATTGTCACCACTACTGGTGGCAAGAATGGTCAACCAAAACAGgtgagtgctt ... gcatttgcagACAGTGAGCTACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATC
EST: gi|60349962|gb|DN216935.1|DN216935
EST:     GC-CATAATTGTCACCACTACTGGGTGGCAAGAATGGTCAACCAAAACAG                         ACAGTGAGCTACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATC
genomic: GCACATAATTGTCACCACTACT-GGTGGCAAGAATGGTCAACCAAAACAGgtgagtgctt ... gcatttgcagACAGTGAGCTACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATC
EST: gi|33097218|gb|CF057178.1|CF057178
EST:     GGCACATAATTGTCACCACTACTGGTGGCAAGAATGGTCAACCAAAACAG                         ACAGTGAGCTACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATC
genomic: GGCACATAATTGTCACCACTACTGGTGGCAAGAATGGTCAACCAAAACAGgtgagtgctt ... gcatttgcagACAGTGAGCTACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATC
EST: gi|32863940|gb|CF003622.1|CF003622
EST:     GGCACATAATTGTCACCACTACTGGTGGCAAGAATGGTCAACCAAAACAG                         ACAGTGAGCTACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATC
genomic: GGCACATAATTGTCACCACTACTGGTGGCAAGAATGGTCAACCAAAACAGgtgagtgctt ... gcatttgcagACAGTGAGCTACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATC
EST: gi|30087106|gb|CB885314.1|CB885314
EST:     GGCACATAATTGTCACCACTACTGGTGGCAAGAATGGTCAACCAAAACAG                         ACAGTGAGCTACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATC
genomic: GGCACATAATTGTCACCACTACTGGTGGCAAGAATGGTCAACCAAAACAGgtgagtgctt ... gcatttgcagACAGTGAGCTACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttttgtcagattctttttgtataataatgtgtatttattggttgcatttgcagACAGTGAGCTACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATCGTCTTCCAG
           attctttttgtataat  TA-rich tract