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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcattatttcgttggtgtatggtcaactcatttttacatggttgaaccaatatttgtttgccttttccagATAACATCAGTGCAATCAAGAAGCGACACAGTGAATACATCTCTTTTTGACAAAAGGGAAAACATTGAGAAATTACATCGCACACGCAATCTGCTCCGGA

Basic information

species Zea mays
transcript GRMZM2G023858_T03
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G023858_T03 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os03g52770.1 (Oryza sativa), 3'ss of exon 3
gtatgcattatttcgttg---gtgtatggtcaactcatttttacatggttgaaccaatatttgtttgcctttt-----ccagATAACATCAGTGCAATCAAGAAGCGACACAGTGAATACATCTCTTTTTGACAAAAGGGAAAACATTGAGAAATTACATCGCACACGCAATCTGCTCCGGA
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gtgtgtactatctcgttgctaatgtattgccagttcattttgataaaactgagataatcggtgttttcctttttttttccagATAACATCAGTGCAATCAAGAAGTGACACAGTGAATACATCTCTTTTTGACAAGAGGGAAAACATAGAGAAACTACATCGTACACGCAATCTCCTCCGAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6626566|gb|AW258098.1|AW258098
EST:     GAGGCAAATATGGAGCAGCTCCTTACAAAG                         ATAACATCAGTGCAATCAAGAAGCGACACAGTGAATACATCTCTTTTTGAC
genomic: GAGGCAAATATGGAGCAGCTCCTTACAAAGgtatgcatta ... ccttttccagATAACATCAGTGCAATCAAGAAGCGACACAGTGAATACATCTCTTTTTGAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtatggtcaactcatttttacatggttgaaccaatatttgtttgccttttccagATAACATCAGTGCAATCAAGAAGCGACACAGTGAATACATCTCTTTTTGACAAAAGGGAAAACATTGAGAAATTACATCGCACACGCAATCTGCTCCGGA
                                     tttgtttgccttttcc  CT-rich tract
                                 aatatttgttt  TA-rich tract